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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0661800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.015) R2 : 0.00125
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0239 (0.0315) R2dN8 : 0.00162 R2N8 : 0.00125
σ : 0.282
deviance : 36.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.03 0.266 3.14 0.876 0.198 0.46 0.101 -3.8 0.0893 9.15 29.98 1487 -- --
33.63 0.27 3.23 0.115 0.206 0.0418 0.112 -- 0.0277 8.76 34.1 5023 -- --
32.01 0.264 3.14 0.865 0.198 0.484 -- -4 0.0873 9.1 29.97 1564 -- --
32.99 0.268 3.23 0.0922 0.242 -0.222 -- -- 0.0396 8.81 35.7 8318 -- --
34 0.272 3.15 0.849 -- 0.593 -- -4.71 0.0791 -- 29.9 1825 -- --
33.69 0.272 3.23 0.104 0.21 -- 0.0795 -- 0.0343 9 -- -- -- --
33.71 0.272 3.23 0.107 0.211 -- -- -- 0.0342 8.9 -- -- -- --
35.37 0.277 3.24 0.0869 -- -0.266 -- -- 0.0432 -- 35.63 6247 -- --
33.13 0.268 3.23 -- 0.213 -0.248 -- -- 0.0329 8.9 35.5 6562 -- --
36.25 0.281 3.24 0.107 -- -- -- -- 0.0357 -- -- -- -- --
34.01 0.273 3.23 -- 0.211 -- -- -- 0.0224 8.86 -- -- -- --
35.57 0.278 3.24 -- -- -0.279 -- -- 0.034 -- 35.68 6148 -- --
36.55 0.282 3.24 -- -- -- -- -- 0.0239 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.97 humidity 90.0 90 > th dose independent rect. 9 1
2 29.97 humidity 90.0 90 > th dose dependent rect. 9 1
3 30.86 atmosphere 1005.0 10 > th dose dependent rect. 2 2
6 31.12 radiation 20.0 10 > th dose independent rect. 8 3
7 31.14 radiation 30.0 10 > th dose independent rect. 10 1
10 31.18 atmosphere 1000.0 90 > th dose independent rect. 3 23
15 31.32 atmosphere 995.0 90 > th dose independent rect. 10 23
16 31.32 radiation 1.0 10 > th dose dependent rect. 7 4
18 31.34 humidity 90.0 90 < th dose independent rect. 2 2
21 31.37 radiation 10.0 90 > th dose independent rect. 7 4
22 31.37 radiation 10.0 10 > th dose dependent rect. 16 19
23 31.38 temperature 25.0 10 > th dose independent rect. 8 2
27 31.39 radiation 1.0 10 > th dose dependent rect. 9 2
45 31.46 atmosphere 995.0 90 > th dose independent rect. 11 20
47 31.47 radiation 20.0 10 > th dose independent rect. 16 19
81 31.53 radiation 30.0 10 > th dose independent sin 10 NA
121 31.59 atmosphere 1005.0 90 > th dose independent rect. 2 1
170 31.62 radiation 1.0 90 > th dose dependent rect. 7 4
171 31.63 radiation 10.0 270 > th dose independent rect. 8 1
174 31.63 radiation 1.0 90 > th dose dependent rect. 16 19
182 31.65 radiation 1.0 43200 < th dose dependent rect. 3 1
197 31.66 radiation 10.0 10 > th dose dependent sin 10 NA
198 31.66 humidity 90.0 90 < th dose dependent rect. 2 1
218 31.67 wind 3.0 90 < th dose independent rect. 2 1
270 31.75 temperature 25.0 90 > th dose independent rect. 1 1
271 31.75 humidity 90.0 30 < th dose independent rect. 9 2
276 31.75 humidity 90.0 90 < th dose dependent rect. 2 5
285 31.76 humidity 90.0 10 < th dose dependent rect. 3 1
289 31.77 wind 5.0 90 < th dose dependent rect. 2 1
291 31.77 temperature 25.0 90 > th dose dependent rect. 1 2
319 31.78 humidity 80.0 90 < th dose dependent rect. 24 3
340 31.79 temperature 30.0 1440 < th dose independent rect. 15 19
343 31.79 temperature 30.0 1440 > th dose independent rect. 14 21
362 31.81 radiation 30.0 10 < th dose independent sin 10 NA
466 31.84 atmosphere 1010.0 10 < th dose dependent rect. 2 1
468 31.84 radiation 1.0 4320 < th dose dependent rect. 3 1
473 31.85 temperature 30.0 1440 > th dose independent rect. 15 4
485 31.85 temperature 30.0 1440 < th dose independent rect. 15 14
504 31.86 wind 7.0 90 < th dose independent rect. 7 4
510 31.87 temperature 30.0 1440 > th dose independent rect. 15 2
511 31.87 temperature 30.0 1440 < th dose independent rect. 15 7
520 31.87 temperature 30.0 1440 > th dose dependent rect. 15 1
541 31.88 temperature 30.0 1440 < th dose independent rect. 15 3
553 31.89 temperature 30.0 1440 < th dose independent sin 12 NA
556 31.89 wind 9.0 1440 < th dose independent rect. 3 1
557 31.89 temperature 10.0 1440 > th dose independent rect. 3 1
560 31.89 temperature 30.0 1440 < th dose independent rect. 3 1
564 31.89 humidity 50.0 1440 > th dose independent rect. 3 1
573 31.89 atmosphere 995.0 1440 > th dose independent rect. 3 1
574 31.89 radiation 1.0 1440 < th dose independent rect. 3 1
597 31.89 temperature 30.0 720 < th dose independent rect. 9 12
603 31.89 temperature 10.0 1440 > th dose independent rect. 4 23
620 31.89 radiation 30.0 90 < th dose dependent rect. 3 12
635 31.91 temperature 10.0 43200 > th dose independent rect. 10 2
637 31.91 temperature 15.0 90 > th dose independent rect. 7 4
646 31.92 temperature 15.0 1440 > th dose independent rect. 10 2
648 31.92 precipitation 0.1 1440 < th dose independent rect. 10 2
651 31.92 humidity 50.0 90 > th dose independent rect. 7 4
698 31.92 precipitation 0.1 1440 < th dose dependent rect. 10 2
699 31.92 radiation 40.0 90 < th dose dependent rect. 3 10
705 31.93 wind 1.0 30 > th dose independent rect. 9 2
707 31.93 wind 1.0 90 > th dose independent rect. 7 4
735 31.94 wind 5.0 14400 < th dose independent rect. 11 1
736 31.94 temperature 30.0 90 < th dose independent rect. 9 1
737 31.94 humidity 90.0 30 > th dose independent rect. 2 1
751 31.94 humidity 80.0 14400 < th dose dependent rect. 2 7
758 31.95 temperature 10.0 30 > th dose independent rect. 2 1
760 31.95 temperature 30.0 30 < th dose independent rect. 2 1
761 31.95 humidity 50.0 30 > th dose independent rect. 2 1
765 31.95 atmosphere 1010.0 30 < th dose independent rect. 2 1
767 31.95 radiation 1.0 30 < th dose independent rect. 2 1
772 31.95 precipitation 0.1 30 < th dose independent rect. 2 1
798 31.95 temperature 10.0 30 > th dose independent rect. 3 23
804 31.95 humidity 50.0 30 > th dose dependent rect. 2 1
808 31.95 humidity 50.0 90 > th dose dependent rect. 9 1
809 31.95 radiation 1.0 30 < th dose dependent rect. 2 1
814 31.95 precipitation 0.1 30 < th dose dependent rect. 2 1
819 31.96 temperature 30.0 1440 > th dose independent sin 12 NA
823 31.96 humidity 60.0 90 > th dose independent rect. 9 1
829 31.96 radiation 30.0 10 < th dose independent rect. 3 11
831 31.96 radiation 30.0 90 < th dose independent rect. 2 13
836 31.96 radiation 1.0 90 > th dose dependent sin 10 NA
847 31.96 radiation 40.0 10 < th dose dependent rect. 3 11
857 31.97 wind 1.0 30 > th dose independent rect. 2 1
863 31.97 atmosphere 995.0 1440 > th dose independent rect. 10 2
872 31.97 temperature 10.0 1440 > th dose independent rect. 12 22
886 31.98 radiation 10.0 4320 > th dose independent rect. 8 1
890 31.98 temperature 10.0 30 > th dose independent rect. 9 2
893 31.98 atmosphere 995.0 30 > th dose independent rect. 9 2
894 31.98 atmosphere 1015.0 30 < th dose independent rect. 9 2
896 31.98 precipitation 0.1 30 < th dose independent rect. 9 2
904 31.98 atmosphere 995.0 10 > th dose independent rect. 11 9
915 31.98 temperature 10.0 30 > th dose independent rect. 11 22
917 31.98 wind 1.0 43200 < th dose dependent rect. 6 1
921 31.98 precipitation 0.1 30 < th dose dependent rect. 9 2
922 31.98 temperature 10.0 90 > th dose dependent rect. 7 4
972 31.99 precipitation 0.1 90 < th dose independent rect. 7 4