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Os01g0661400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nucleic acid-binding, OB-fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.37 (0.033) R2 : 0.658
β1 : 1.12 (0.121) R2dD : 0.0683 R2D : 0.0731
β2 : 2.16 (0.0882) R2dC : 0.494 R2C : 0.261
β3 : 1.95 (0.0989) R2dE : 0.319 R2E : 0.0982
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00488 (0.0703) R2dN8 : 1.24e-05 R2N8 : -0.00331
σ : 0.616
deviance : 174.77
__
_____
C
peak time of C : 19.6
E
wheather : temperature
threshold : 11.81
memory length : 116
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.08
open length of G : 6.53

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.89 0.614 7.37 1.16 2.15 1.94 0.835 -0.945 -0.0119 19.8 10.68 91 8.12 7.01
172.26 0.611 7.37 1.15 2.16 1.95 1.14 -- -0.0137 19.8 10.82 79 8.33 6.88
170.43 0.608 7.37 1.12 2.18 2.05 -- -1.53 0.00863 19.7 11.76 119 8.03 6.53
174.77 0.616 7.37 1.12 2.16 1.95 -- -- 0.00488 19.6 11.81 116 8.08 6.53
199.09 0.657 7.31 1.35 -- 2.43 -- -0.427 0.0289 -- -12.76 972 6.33 6.67
229.97 0.711 7.35 1.25 2.15 -- 0.283 -- 0.00674 17.3 -- -- -- --
230.16 0.71 7.35 1.25 2.15 -- -- -- 0.00809 17.3 -- -- -- --
191.07 0.644 7.32 0.976 -- 2.18 -- -- -0.0748 -- 5.246 891 8.02 3.92
208.3 0.672 7.36 -- 2.14 2.07 -- -- -0.0911 19.6 13.16 114 8.12 6.52
471.75 1.01 7.32 1.18 -- -- -- -- -0.0456 -- -- -- -- --
271.51 0.771 7.38 -- 2.13 -- -- -- -0.131 17.3 -- -- -- --
213.28 0.68 7.35 -- -- 2.32 -- -- -0.207 -- 10.46 916 7.92 4.08
508.37 1.05 7.35 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.48 temperature 10.0 90 > th dose dependent rect. 8 7
5 174.32 temperature 15.0 270 > th dose dependent rect. 8 4
6 174.69 temperature 15.0 10 > th dose dependent rect. 9 6
10 175.48 temperature 10.0 90 > th dose dependent rect. 8 19
15 176.03 temperature 10.0 10 > th dose dependent rect. 9 19
27 178.09 temperature 15.0 270 > th dose dependent rect. 9 1
34 178.43 temperature 10.0 270 > th dose dependent rect. 22 14
51 179.76 humidity 90.0 90 < th dose independent rect. 8 7
54 180.05 temperature 20.0 90 > th dose independent rect. 8 7
92 182.68 wind 5.0 270 < th dose independent rect. 3 4
96 182.82 temperature 20.0 10 > th dose independent rect. 9 6
110 183.35 humidity 90.0 10 < th dose independent rect. 9 6
111 183.42 humidity 90.0 270 < th dose independent rect. 8 4
112 183.45 temperature 15.0 270 > th dose independent rect. 7 20
126 183.81 wind 9.0 270 < th dose independent rect. 7 20
127 183.99 wind 9.0 270 < th dose dependent rect. 7 6
130 184.11 wind 9.0 90 < th dose independent rect. 8 7
131 184.17 precipitation 0.1 270 < th dose independent rect. 3 4
132 184.17 precipitation 0.1 270 < th dose dependent rect. 3 4
140 184.42 wind 9.0 270 < th dose dependent rect. 8 3
151 185.03 precipitation 0.1 90 < th dose independent rect. 8 7
152 185.03 precipitation 0.1 90 < th dose dependent rect. 8 7
160 185.25 temperature 10.0 43200 > th dose independent rect. 10 6
169 185.40 atmosphere 1015.0 90 < th dose independent rect. 8 7
170 185.40 temperature 10.0 90 > th dose independent rect. 15 17
174 185.47 temperature 20.0 270 > th dose independent rect. 8 4
175 185.54 precipitation 0.1 90 < th dose independent rect. 15 17
176 185.54 precipitation 0.1 90 < th dose dependent rect. 15 17
177 185.55 radiation 1.0 30 > th dose dependent rect. 18 14
179 185.56 temperature 10.0 270 > th dose independent rect. 3 4
181 185.56 temperature 30.0 270 < th dose independent rect. 3 4
182 185.56 humidity 50.0 270 > th dose independent rect. 3 4
184 185.56 atmosphere 995.0 270 > th dose independent rect. 3 4
185 185.56 atmosphere 1015.0 270 < th dose independent rect. 3 4
186 185.56 radiation 40.0 270 < th dose independent rect. 3 4
193 185.66 atmosphere 995.0 90 > th dose independent rect. 15 17
194 185.70 radiation 1.0 30 > th dose dependent rect. 5 3
207 185.73 radiation 40.0 270 < th dose dependent rect. 3 4
213 185.87 atmosphere 995.0 90 > th dose independent rect. 8 7
216 185.89 temperature 15.0 270 > th dose independent rect. 8 18
221 186.02 humidity 90.0 270 < th dose independent rect. 9 1
237 186.42 wind 7.0 270 < th dose independent rect. 8 18
242 186.52 temperature 20.0 270 > th dose independent rect. 9 1
243 186.53 wind 1.0 90 > th dose independent rect. 8 7
246 186.59 wind 9.0 90 < th dose independent rect. 15 17
251 186.68 wind 5.0 270 < th dose independent rect. 8 3
258 186.73 wind 9.0 270 < th dose dependent rect. 3 4
261 186.79 radiation 40.0 90 < th dose independent rect. 15 17
263 186.81 wind 5.0 270 < th dose independent rect. 2 6
265 186.83 radiation 1.0 90 > th dose independent rect. 8 7
267 186.94 wind 9.0 10 < th dose independent rect. 9 6
269 186.97 precipitation 0.1 270 < th dose independent rect. 2 6
272 186.97 precipitation 0.1 270 < th dose dependent rect. 2 6
279 187.09 wind 9.0 270 < th dose dependent rect. 9 1
290 187.24 precipitation 0.1 270 < th dose independent rect. 7 20
291 187.24 precipitation 0.1 270 < th dose dependent rect. 7 20
310 187.50 radiation 1.0 270 > th dose independent rect. 9 1
313 187.53 radiation 1.0 90 > th dose independent rect. 18 14
330 187.72 humidity 50.0 90 > th dose independent rect. 8 7
331 187.72 precipitation 0.1 270 < th dose independent rect. 3 14
333 187.72 precipitation 0.1 270 < th dose dependent rect. 3 14
342 187.91 radiation 1.0 270 > th dose independent rect. 8 3
355 188.16 radiation 40.0 270 < th dose independent rect. 2 6
362 188.23 temperature 10.0 270 > th dose independent rect. 2 6
364 188.23 temperature 30.0 270 < th dose independent rect. 2 6
365 188.23 humidity 50.0 270 > th dose independent rect. 2 6
367 188.23 atmosphere 995.0 270 > th dose independent rect. 2 6
368 188.23 atmosphere 1015.0 270 < th dose independent rect. 2 6
373 188.28 humidity 50.0 90 > th dose independent rect. 15 17
380 188.34 wind 9.0 270 < th dose independent rect. 17 10
382 188.35 atmosphere 995.0 10 > th dose independent rect. 15 18
383 188.38 precipitation 0.1 10 < th dose independent rect. 15 18
384 188.38 precipitation 0.1 10 < th dose dependent rect. 15 18
386 188.39 temperature 10.0 10 > th dose independent rect. 9 6
388 188.39 atmosphere 995.0 10 > th dose independent rect. 9 6
389 188.39 atmosphere 1015.0 10 < th dose independent rect. 9 6
390 188.39 precipitation 0.1 10 < th dose independent rect. 9 6
391 188.39 temperature 10.0 10 > th dose independent rect. 15 18
392 188.39 precipitation 0.1 10 < th dose dependent rect. 9 6
399 188.47 radiation 40.0 90 < th dose independent rect. 13 19
420 188.71 radiation 1.0 10 > th dose independent rect. 9 6
429 188.79 temperature 10.0 270 > th dose independent rect. 17 10
430 188.79 radiation 20.0 270 < th dose independent rect. 17 10
433 188.79 temperature 10.0 270 > th dose independent rect. 3 14
434 188.79 atmosphere 1015.0 270 < th dose independent rect. 3 14
436 188.80 radiation 40.0 270 < th dose dependent rect. 17 10
450 188.91 radiation 1.0 90 > th dose independent rect. 4 4
501 189.28 atmosphere 1015.0 90 < th dose independent rect. 15 17
514 189.34 humidity 90.0 90 < th dose independent rect. 3 5
516 189.41 temperature 10.0 1440 > th dose independent rect. 10 6
519 189.41 temperature 10.0 1440 > th dose independent rect. 16 18
524 189.42 wind 9.0 10 < th dose independent rect. 15 18
525 189.42 precipitation 0.1 270 < th dose independent rect. 8 18
526 189.42 precipitation 0.1 270 < th dose dependent rect. 8 18
536 189.56 wind 1.0 270 > th dose independent rect. 3 4
564 189.75 precipitation 0.1 270 < th dose independent rect. 17 10
565 189.75 precipitation 0.1 270 < th dose dependent rect. 17 10
590 189.93 atmosphere 1000.0 90 > th dose dependent rect. 3 5
596 189.98 humidity 50.0 270 > th dose independent rect. 17 10
598 189.99 wind 1.0 270 > th dose independent rect. 2 6
599 189.99 humidity 90.0 10 < th dose dependent rect. 9 6
613 190.05 wind 9.0 10 < th dose independent rect. 9 19
658 190.31 humidity 90.0 90 < th dose dependent rect. 8 6
672 190.47 humidity 50.0 10 > th dose independent rect. 15 18
676 190.52 radiation 1.0 270 < th dose dependent rect. 4 1
679 190.53 wind 9.0 270 < th dose dependent rect. 4 2
738 190.75 temperature 30.0 270 < th dose dependent rect. 3 4
757 190.82 wind 1.0 270 > th dose independent rect. 13 18
758 190.82 humidity 50.0 270 > th dose dependent rect. 3 4
768 190.84 humidity 90.0 270 < th dose dependent rect. 9 1
778 190.90 atmosphere 1015.0 10 < th dose independent rect. 15 18
786 190.94 atmosphere 995.0 270 > th dose independent rect. 17 10
788 190.94 wind 9.0 270 < th dose dependent rect. 7 20
792 191.01 atmosphere 995.0 270 > th dose independent rect. 3 14
793 191.01 temperature 30.0 270 < th dose dependent rect. 4 1
810 191.08 temperature 15.0 270 > th dose independent rect. 22 14
837 191.20 humidity 90.0 270 < th dose dependent rect. 8 3
857 191.22 wind 1.0 270 > th dose independent rect. 11 21
930 191.48 temperature 10.0 90 > th dose dependent rect. 4 4
936 191.55 precipitation 0.1 270 < th dose independent rect. 9 1
939 191.55 precipitation 0.1 270 < th dose dependent rect. 9 1
989 191.73 radiation 1.0 270 < th dose independent rect. 4 1