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Os01g0660900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phosphoglycerate mutase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.5 (0.0312) R2 : 0.925
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.63 (0.0882) R2dC : 0.37 R2C : 0.666
β3 : 3.35 (0.101) R2dE : 0.24 R2E : 0.539
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.522 (0.0657) R2dN8 : 0.0136 R2N8 : 0.0186
σ : 0.585
deviance : 157.86
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C
peak time of C : 14.5
E
wheather : precipitation
threshold : 0.5
memory length : 231
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.9
open length of G : 19.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
149.33 0.574 9.5 -0.52 3.54 3.37 0.454 -0.932 -0.561 14.3 0.4989 255 5.93 19.5
150.84 0.572 9.52 -0.546 3.56 3.4 0.244 -- -0.579 14.3 0.1526 252 5.91 19.6
149.79 0.57 9.5 -0.527 3.56 3.35 -- -0.642 -0.554 14.3 0.4132 249 5.93 19.6
150.21 0.571 9.51 -0.495 3.58 3.35 -- -- -0.587 14.4 0.4871 236 5.9 19.8
374.45 0.901 9.56 -0.515 -- 5.38 -- 3.76 -0.575 -- 0.4753 366 4.92 16.6
367.88 0.899 9.58 -0.759 5.47 -- 0.289 -- -0.692 15.6 -- -- -- --
368.13 0.899 9.58 -0.754 5.47 -- -- -- -0.69 15.6 -- -- -- --
297.77 0.804 9.5 -0.36 -- 5.07 -- -- -0.457 -- 0.4851 321 5.87 15.4
157.86 0.585 9.5 -- 3.63 3.35 -- -- -0.522 14.5 0.5 231 5.9 19.9
2033.56 2.11 9.58 -0.983 -- -- -- -- -0.836 -- -- -- -- --
383.13 0.916 9.56 -- 5.49 -- -- -- -0.606 15.6 -- -- -- --
298.27 0.804 9.51 -- -- 5.04 -- -- -0.543 -- 0.4973 344 5.68 15
2059.07 2.12 9.55 -- -- -- -- -- -0.727 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 151.13 humidity 50.0 270 > th dose dependent rect. 1 5
3 153.23 precipitation 0.1 270 < th dose independent rect. 6 19
4 153.23 precipitation 0.1 270 < th dose dependent rect. 6 19
5 153.52 humidity 50.0 90 > th dose dependent rect. 3 4
7 153.97 radiation 10.0 270 < th dose independent rect. 1 5
9 155.10 atmosphere 1010.0 270 < th dose independent rect. 1 5
11 155.34 radiation 20.0 270 < th dose dependent rect. 1 5
14 155.61 temperature 10.0 270 > th dose independent rect. 1 5
16 155.61 temperature 30.0 270 < th dose independent rect. 1 5
17 155.61 humidity 50.0 270 > th dose independent rect. 1 5
20 155.61 atmosphere 995.0 270 > th dose independent rect. 1 5
25 155.61 temperature 10.0 270 > th dose independent rect. 6 19
26 155.66 wind 9.0 270 < th dose independent rect. 1 5
28 155.86 precipitation 0.1 270 < th dose independent rect. 5 21
29 155.86 precipitation 0.1 270 < th dose dependent rect. 5 21
32 156.70 wind 9.0 270 < th dose independent rect. 6 19
33 156.96 precipitation 0.1 270 < th dose independent rect. 1 5
34 156.96 precipitation 0.1 270 < th dose dependent rect. 1 5
35 157.73 temperature 10.0 270 > th dose dependent rect. 1 5
37 158.01 humidity 70.0 90 > th dose independent rect. 3 4
39 158.12 radiation 20.0 90 < th dose independent rect. 3 4
40 158.20 radiation 1.0 270 < th dose independent rect. 2 3
42 158.20 wind 9.0 90 < th dose dependent rect. 3 4
43 158.21 radiation 10.0 270 < th dose dependent rect. 2 3
47 158.33 wind 9.0 270 < th dose independent rect. 2 3
48 158.33 temperature 10.0 270 > th dose independent rect. 2 3
50 158.33 temperature 30.0 270 < th dose independent rect. 2 3
51 158.33 humidity 50.0 270 > th dose independent rect. 2 3
54 158.33 atmosphere 995.0 270 > th dose independent rect. 2 3
55 158.33 atmosphere 1010.0 270 < th dose independent rect. 2 3
60 158.33 temperature 10.0 270 > th dose independent rect. 5 21
77 159.37 precipitation 0.1 90 < th dose independent rect. 3 4
78 159.37 precipitation 0.1 90 < th dose dependent rect. 3 4
81 160.41 wind 9.0 270 < th dose independent rect. 5 21
84 161.91 temperature 10.0 270 > th dose dependent rect. 2 3
104 167.23 wind 9.0 270 < th dose dependent rect. 1 5
161 172.33 atmosphere 995.0 90 > th dose independent rect. 7 20
182 172.57 wind 1.0 270 > th dose independent rect. 6 19
206 174.51 radiation 1.0 270 < th dose dependent rect. 2 10
231 176.71 wind 1.0 270 > th dose independent rect. 5 21
365 183.77 atmosphere 1015.0 90 < th dose dependent rect. 3 4
371 184.01 humidity 50.0 10 > th dose dependent rect. 3 5
387 184.72 atmosphere 995.0 270 > th dose independent rect. 5 21
404 185.34 temperature 15.0 270 > th dose independent rect. 11 19
415 187.12 humidity 50.0 90 > th dose independent rect. 7 20
441 187.44 radiation 20.0 10 < th dose independent rect. 3 5
460 188.93 temperature 10.0 10 > th dose dependent rect. 3 4
477 189.79 atmosphere 995.0 90 > th dose dependent rect. 3 4
534 191.11 temperature 15.0 90 > th dose independent rect. 13 18
599 193.15 wind 9.0 1440 < th dose independent rect. 4 4
600 193.15 temperature 10.0 1440 > th dose independent rect. 4 4
603 193.15 temperature 30.0 1440 < th dose independent rect. 4 4
607 193.15 humidity 50.0 1440 > th dose independent rect. 4 4
612 193.15 atmosphere 995.0 1440 > th dose independent rect. 4 4
613 193.15 atmosphere 1015.0 1440 < th dose independent rect. 4 4
614 193.15 temperature 10.0 1440 > th dose independent rect. 8 20
630 193.98 radiation 40.0 10 < th dose dependent rect. 3 5
654 194.54 temperature 15.0 90 > th dose independent rect. 15 16
660 194.87 temperature 15.0 270 > th dose independent rect. 11 10
686 195.91 radiation 1.0 270 > th dose independent sin 4 NA
687 195.92 atmosphere 1010.0 90 < th dose independent rect. 13 18
711 196.41 radiation 40.0 90 < th dose independent rect. 13 18
726 196.92 radiation 1.0 270 < th dose independent sin 4 NA
732 197.20 wind 1.0 270 > th dose independent rect. 2 3
737 197.57 atmosphere 1015.0 270 < th dose dependent rect. 1 5
744 197.77 radiation 1.0 270 < th dose dependent sin 4 NA
747 198.05 atmosphere 1010.0 270 < th dose independent rect. 11 19
753 198.35 atmosphere 995.0 270 > th dose dependent rect. 1 5
838 200.35 wind 7.0 270 < th dose independent rect. 6 5
863 200.54 humidity 50.0 270 > th dose independent rect. 5 21
864 200.59 precipitation 0.1 270 < th dose independent rect. 6 5
865 200.59 precipitation 0.1 270 < th dose dependent rect. 6 5
869 200.80 temperature 10.0 270 > th dose independent rect. 6 5
870 200.80 atmosphere 995.0 270 > th dose independent rect. 6 5
871 200.80 atmosphere 1015.0 270 < th dose independent rect. 6 5
897 201.63 atmosphere 1015.0 270 < th dose independent rect. 11 10
907 201.93 humidity 50.0 270 > th dose independent rect. 6 5
910 202.03 radiation 20.0 90 < th dose dependent rect. 3 10
912 202.18 atmosphere 1015.0 270 < th dose independent rect. 6 19
966 203.49 wind 9.0 270 < th dose independent rect. 11 19
994 204.32 wind 9.0 270 < th dose independent rect. 21 14
995 204.32 temperature 30.0 90 < th dose dependent rect. 3 4
996 204.34 radiation 1.0 270 > th dose independent rect. 6 5