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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0660700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF295 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0465) R2 : 0.0741
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.17 (0.572) R2dE : 0.0653 R2E : 0.0676
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.196 (0.098) R2dN8 : 0.00652 R2N8 : 0.00879
σ : 0.873
deviance : 351.56
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_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1016
memory length : 1585
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 1.55
open length of G : 6.28

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
338.32 0.864 3.13 0.0901 0.142 6.64 0.394 -15.5 -0.163 23.6 1015 1438 3 8.98
353.68 0.876 3.14 0.0957 0.147 2.96 0.944 -- -0.144 21.4 1014 1552 2.37 7.78
338.97 0.857 3.13 0.0763 0.141 6.68 -- -15.8 -0.165 23.2 1015 1438 2.98 8.98
352.33 0.874 3.13 0.0911 0.124 2.79 -- -- -0.181 22 1015 1627 1.48 7.11
340.22 0.859 3.12 0.0787 -- 6.59 -- -15.7 -0.164 -- 1015 1436 3.01 8.96
373.9 0.907 3.14 -0.0253 0.0973 -- 0.593 -- -0.217 23.6 -- -- -- --
375.42 0.907 3.14 -0.0496 0.0949 -- -- -- -0.219 23.9 -- -- -- --
352.95 0.875 3.12 0.0822 -- 2.85 -- -- -0.176 -- 1016 1604 1.45 7.02
350.75 0.872 3.14 -- 0.121 3.16 -- -- -0.193 22.1 1016 1591 1.92 5.85
375.98 0.906 3.14 -0.0467 -- -- -- -- -0.218 -- -- -- -- --
375.48 0.906 3.14 -- 0.0943 -- -- -- -0.214 23.9 -- -- -- --
351.56 0.873 3.11 -- -- 3.17 -- -- -0.196 -- 1016 1585 1.55 6.28
376.04 0.905 3.13 -- -- -- -- -- -0.213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 338.35 atmosphere 1015.0 1440 > th dose dependent rect. 3 9
3 340.55 atmosphere 1015.0 1440 > th dose independent rect. 3 9
4 341.95 atmosphere 1015.0 1440 < th dose independent rect. 3 9
5 344.92 atmosphere 1015.0 1440 < th dose independent rect. 5 6
11 345.43 atmosphere 1015.0 1440 < th dose independent rect. 8 3
17 345.59 atmosphere 1015.0 1440 > th dose independent rect. 10 1
32 345.59 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
47 345.63 atmosphere 1015.0 1440 < th dose independent rect. 11 1
51 348.71 atmosphere 1010.0 270 > th dose independent rect. 23 9
52 349.80 temperature 15.0 90 > th dose independent rect. 11 22
54 350.49 atmosphere 1010.0 10 > th dose independent rect. 12 23
56 350.55 atmosphere 1010.0 90 > th dose independent rect. 23 11
57 350.56 atmosphere 1010.0 10 > th dose independent rect. 23 12
79 350.61 temperature 15.0 10 > th dose independent rect. 12 21
109 352.26 atmosphere 1010.0 720 > th dose independent rect. 23 1
114 352.55 temperature 15.0 10 > th dose independent rect. 19 14
115 352.56 temperature 15.0 270 > th dose independent rect. 17 13
119 352.80 temperature 15.0 90 > th dose independent rect. 19 13
139 353.74 atmosphere 1010.0 30 < th dose independent rect. 12 21
151 353.91 temperature 15.0 720 > th dose independent rect. 18 4
153 353.94 temperature 15.0 1440 > th dose independent rect. 19 1
162 354.27 atmosphere 1010.0 30 > th dose independent sin 8 NA
163 354.40 wind 1.0 30 > th dose independent rect. 9 15
165 354.50 wind 1.0 90 > th dose independent rect. 8 17
182 354.81 temperature 15.0 720 > th dose independent rect. 11 11
184 354.85 temperature 15.0 30 > th dose independent rect. 23 23
188 355.00 atmosphere 1010.0 270 > th dose independent rect. 5 3
259 356.58 wind 1.0 90 > th dose independent rect. 8 19
276 356.83 atmosphere 1010.0 90 < th dose independent rect. 23 10
282 356.97 temperature 15.0 1440 > th dose independent rect. 14 6
284 357.02 atmosphere 1010.0 30 < th dose independent rect. 19 14
314 357.50 temperature 15.0 90 > th dose independent rect. 23 9
320 357.58 radiation 1.0 1440 < th dose independent rect. 12 1
321 357.58 radiation 1.0 1440 < th dose dependent rect. 12 1
322 357.59 atmosphere 1010.0 720 > th dose independent rect. 18 8
330 357.72 temperature 15.0 10 > th dose independent rect. 11 23
350 357.80 atmosphere 1010.0 270 < th dose independent rect. 10 21
364 357.94 wind 1.0 30 > th dose independent rect. 22 14
368 357.95 temperature 20.0 1440 < th dose dependent rect. 13 2
378 358.04 precipitation 0.1 720 > th dose independent rect. 15 1
382 358.04 precipitation 0.1 720 > th dose dependent rect. 15 1
385 358.08 temperature 15.0 1440 > th dose independent rect. 14 3
406 358.25 atmosphere 1010.0 90 > th dose independent rect. 8 1
407 358.25 atmosphere 1010.0 10 > th dose independent rect. 9 1
470 358.32 temperature 15.0 1440 > th dose independent rect. 14 1
471 358.32 temperature 20.0 720 < th dose independent rect. 13 1
475 358.32 wind 9.0 10 < th dose dependent rect. 12 21
478 358.33 temperature 15.0 720 < th dose dependent rect. 13 13
481 358.34 temperature 15.0 720 < th dose dependent rect. 17 9
489 358.36 temperature 15.0 720 < th dose independent rect. 23 2
498 358.37 temperature 15.0 720 < th dose independent rect. 10 15
509 358.39 temperature 15.0 720 < th dose dependent rect. 23 2
519 358.40 temperature 15.0 720 < th dose dependent sin 18 NA
545 358.45 temperature 15.0 1440 > th dose independent rect. 9 7
548 358.46 temperature 15.0 720 < th dose independent sin 19 NA
591 358.57 temperature 15.0 270 > th dose independent rect. 21 9
603 358.60 temperature 20.0 1440 < th dose dependent rect. 12 5
604 358.61 temperature 15.0 720 > th dose independent sin 18 NA
610 358.64 temperature 25.0 90 < th dose independent rect. 9 2
624 358.69 temperature 15.0 1440 > th dose independent rect. 9 5
634 358.71 temperature 15.0 720 > th dose independent rect. 7 16
638 358.73 wind 9.0 10 < th dose dependent rect. 19 14
643 358.75 atmosphere 1010.0 270 < th dose independent rect. 21 10
652 358.78 atmosphere 1005.0 30 > th dose dependent rect. 9 1
664 358.83 atmosphere 1010.0 720 < th dose independent rect. 18 6
716 358.95 atmosphere 1010.0 720 > th dose independent sin 15 NA
764 358.99 atmosphere 1010.0 270 < th dose independent rect. 17 13
765 358.99 temperature 15.0 10 > th dose independent rect. 16 17
767 358.99 temperature 15.0 720 < th dose dependent sin 0 NA
773 359.01 atmosphere 1010.0 30 < th dose independent rect. 23 23
804 359.09 temperature 25.0 270 < th dose independent rect. 7 2
834 359.15 atmosphere 1010.0 270 > th dose dependent rect. 24 6
932 359.24 temperature 15.0 90 > th dose independent sin 1 NA
933 359.24 temperature 15.0 90 > th dose independent no NA NA
935 359.24 temperature 15.0 90 < th dose independent sin 7 NA
983 359.24 temperature 15.0 90 < th dose independent no NA NA
985 359.24 temperature 15.0 1440 < th dose independent rect. 5 1
987 359.24 temperature 15.0 1440 < th dose independent rect. 9 1
990 359.24 atmosphere 1015.0 1440 > th dose independent rect. 1 1