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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0660400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.24 (0.0243) R2 : 0.00151
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0425 (0.0512) R2dN8 : 0.00195 R2N8 : 0.00151
σ : 0.458
deviance : 96.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
90.96 0.448 3.22 0.154 0.293 0.237 -1.98 -1.99 -0.0055 11 1.5 125 -- --
93.88 0.455 3.24 0.028 0.152 -0.0348 -0.694 -- -0.0472 4.88 3.772 90 -- --
93.78 0.451 3.23 0.0494 0.142 0.131 -- -0.543 -0.0371 10.1 15.5 289 -- --
94.99 0.454 3.23 0.0398 0.131 0.104 -- -- -0.0385 9.06 19.21 294 -- --
93.37 0.45 3.23 0.0712 -- 0.183 -- -0.963 -0.0285 -- 0.5528 666 -- --
93.97 0.454 3.24 0.0316 0.149 -- -0.692 -- -0.0453 5.29 -- -- -- --
95.06 0.457 3.23 0.0317 0.152 -- -- -- -0.0418 6.31 -- -- -- --
94.98 0.454 3.24 0.0593 -- 0.186 -- -- -0.0352 -- 0.08 708 -- --
95.02 0.454 3.23 -- 0.131 0.0826 -- -- -0.04 8.38 19 281 -- --
96.26 0.458 3.24 0.0358 -- -- -- -- -0.0385 -- -- -- -- --
95.09 0.456 3.24 -- 0.152 -- -- -- -0.0453 6.3 -- -- -- --
94.96 0.454 3.24 -- -- 0.213 -- -- -0.0412 -- 4.873e-05 815 -- --
96.29 0.458 3.24 -- -- -- -- -- -0.0425 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.77 wind 1.0 30 < th dose dependent rect. 5 1
6 83.98 wind 1.0 30 < th dose independent rect. 5 1
12 85.25 wind 1.0 30 < th dose dependent rect. 5 7
28 86.23 wind 1.0 30 < th dose dependent rect. 5 13
36 86.38 humidity 90.0 10 < th dose independent rect. 4 1
39 86.59 radiation 1.0 10 < th dose dependent rect. 4 2
41 86.81 radiation 1.0 10 < th dose dependent rect. 4 10
43 86.84 radiation 1.0 10 < th dose dependent rect. 4 4
47 86.89 wind 1.0 30 > th dose independent rect. 4 1
53 87.19 temperature 25.0 10 > th dose independent rect. 4 1
56 87.27 atmosphere 1005.0 30 > th dose dependent rect. 4 1
58 87.29 temperature 25.0 90 > th dose dependent rect. 4 1
61 87.35 wind 1.0 30 > th dose dependent rect. 4 1
65 87.38 radiation 1.0 10 < th dose independent rect. 4 2
69 87.60 radiation 1.0 10 < th dose independent rect. 4 10
72 87.69 temperature 15.0 90 > th dose dependent rect. 4 1
93 87.89 wind 1.0 30 < th dose independent rect. 5 7
128 88.58 wind 5.0 30 < th dose independent rect. 4 1
130 88.58 atmosphere 1005.0 30 > th dose independent rect. 4 1
136 88.62 temperature 10.0 30 > th dose independent rect. 4 1
138 88.62 temperature 30.0 30 < th dose independent rect. 4 1
139 88.62 humidity 50.0 30 > th dose independent rect. 4 1
143 88.62 atmosphere 995.0 30 > th dose independent rect. 4 1
144 88.62 atmosphere 1010.0 30 < th dose independent rect. 4 1
151 88.62 temperature 10.0 30 > th dose independent rect. 5 23
158 88.64 precipitation 0.1 30 < th dose independent rect. 4 1
160 88.64 precipitation 0.1 30 < th dose dependent rect. 4 1
161 88.67 temperature 30.0 30 < th dose dependent rect. 4 1
164 88.75 humidity 50.0 30 > th dose dependent rect. 4 1
167 88.77 wind 9.0 30 < th dose dependent rect. 4 1
169 88.80 atmosphere 1015.0 90 < th dose dependent rect. 4 1
172 88.81 temperature 25.0 90 > th dose independent rect. 2 3
185 88.87 wind 7.0 1440 < th dose independent rect. 5 1
187 88.87 temperature 10.0 1440 > th dose independent rect. 5 1
190 88.87 temperature 30.0 1440 < th dose independent rect. 5 1
194 88.87 humidity 50.0 1440 > th dose independent rect. 5 1
203 88.87 atmosphere 995.0 1440 > th dose independent rect. 5 1
204 88.87 atmosphere 1015.0 1440 < th dose independent rect. 5 1
205 88.87 radiation 20.0 1440 < th dose independent rect. 5 1
214 88.87 temperature 10.0 1440 > th dose independent rect. 6 23
251 88.93 humidity 90.0 10 > th dose dependent rect. 6 1
259 88.99 wind 9.0 30 < th dose independent rect. 5 23
301 89.12 precipitation 0.1 90 < th dose independent rect. 5 23
302 89.12 precipitation 0.1 90 < th dose dependent rect. 5 23
311 89.16 wind 1.0 30 < th dose dependent rect. 5 22
318 89.20 humidity 90.0 10 < th dose dependent rect. 4 1
335 89.26 wind 1.0 30 < th dose independent rect. 5 13
357 89.39 temperature 25.0 90 > th dose dependent rect. 2 3
358 89.40 temperature 20.0 10 > th dose dependent rect. 2 4
387 89.67 wind 3.0 270 < th dose independent rect. 2 1
393 89.72 atmosphere 1000.0 90 > th dose independent rect. 5 23
408 89.82 wind 1.0 30 < th dose dependent rect. 2 5
416 89.89 wind 5.0 270 < th dose dependent rect. 2 1
418 89.91 atmosphere 1000.0 720 > th dose independent rect. 23 9
423 89.92 atmosphere 1000.0 30 > th dose independent rect. 23 23
425 89.92 wind 5.0 30 < th dose dependent rect. 2 4
426 89.93 humidity 90.0 10 > th dose independent rect. 6 1
430 89.96 atmosphere 1000.0 720 > th dose independent rect. 5 6
433 89.98 atmosphere 1000.0 720 > th dose independent rect. 20 15
439 89.99 atmosphere 1005.0 30 > th dose dependent rect. 2 3
468 90.15 wind 3.0 270 < th dose independent rect. 1 4
475 90.17 radiation 1.0 90 < th dose dependent rect. 1 23
479 90.20 wind 3.0 30 < th dose independent rect. 2 4
492 90.27 wind 9.0 720 < th dose independent rect. 17 6
498 90.28 wind 1.0 30 < th dose dependent rect. 2 10
508 90.32 temperature 25.0 10 > th dose independent rect. 22 8
509 90.32 precipitation 0.1 720 < th dose independent rect. 23 18
513 90.32 precipitation 0.1 720 < th dose dependent rect. 23 18
527 90.38 radiation 10.0 30 < th dose independent rect. 2 4
531 90.40 radiation 10.0 43200 < th dose dependent rect. 23 1
538 90.42 humidity 80.0 10 > th dose independent rect. 2 4
540 90.42 radiation 1.0 90 < th dose independent rect. 1 23
574 90.51 atmosphere 1005.0 90 < th dose independent rect. 4 5
576 90.51 atmosphere 1000.0 90 > th dose independent rect. 23 12
597 90.53 radiation 1.0 10 < th dose independent rect. 2 12
612 90.54 radiation 1.0 4320 < th dose dependent rect. 23 1
617 90.56 wind 7.0 720 < th dose independent rect. 17 12
624 90.57 radiation 20.0 720 < th dose independent rect. 17 6
625 90.57 wind 5.0 270 < th dose dependent rect. 1 4
634 90.58 radiation 1.0 90 < th dose dependent rect. 2 21
637 90.59 precipitation 0.1 720 < th dose independent rect. 5 6
642 90.59 precipitation 0.1 720 < th dose dependent rect. 5 6
669 90.63 temperature 25.0 10 > th dose dependent rect. 22 1
681 90.66 atmosphere 995.0 720 > th dose independent rect. 11 18
682 90.66 atmosphere 1000.0 270 > th dose independent rect. 3 23
683 90.66 radiation 1.0 90 < th dose dependent sin 3 NA
686 90.67 atmosphere 995.0 720 > th dose independent rect. 23 18
692 90.67 radiation 40.0 720 < th dose dependent rect. 17 6
720 90.68 humidity 70.0 30 < th dose dependent rect. 19 1
741 90.69 wind 9.0 720 < th dose independent rect. 5 6
742 90.69 radiation 1.0 10 < th dose independent rect. 2 10
750 90.70 wind 9.0 1440 < th dose independent rect. 23 1
751 90.70 temperature 25.0 10 > th dose independent rect. 22 1
753 90.70 temperature 10.0 1440 > th dose independent rect. 23 1
756 90.70 temperature 30.0 1440 < th dose independent rect. 23 1
760 90.70 humidity 50.0 1440 > th dose independent rect. 23 1
770 90.70 atmosphere 995.0 1440 > th dose independent rect. 23 1
771 90.70 radiation 1.0 1440 < th dose independent rect. 23 1
792 90.70 radiation 1.0 10 < th dose independent rect. 2 6
796 90.70 temperature 30.0 270 < th dose independent rect. 1 13
798 90.70 temperature 10.0 1440 > th dose independent rect. 24 23
815 90.71 atmosphere 995.0 720 > th dose independent rect. 17 6
822 90.72 wind 3.0 30 < th dose independent rect. 22 1
831 90.72 atmosphere 1005.0 30 > th dose dependent rect. 22 1
832 90.72 humidity 50.0 30 > th dose dependent rect. 2 4
837 90.73 temperature 10.0 720 > th dose independent rect. 17 6
840 90.73 temperature 10.0 720 > th dose independent rect. 23 18
846 90.74 humidity 80.0 30 > th dose independent rect. 22 1
854 90.75 humidity 90.0 30 < th dose independent rect. 22 1
855 90.75 atmosphere 1005.0 30 > th dose independent rect. 22 1
858 90.75 temperature 10.0 720 > th dose independent rect. 5 6
860 90.75 atmosphere 1015.0 720 < th dose independent rect. 5 6
861 90.75 atmosphere 995.0 720 > th dose independent rect. 11 9
863 90.75 temperature 10.0 720 > th dose independent rect. 11 18
864 90.75 wind 9.0 30 < th dose independent rect. 6 20
865 90.75 wind 5.0 30 < th dose dependent rect. 22 1
871 90.76 wind 1.0 30 > th dose independent rect. 22 1
903 90.77 precipitation 0.1 30 < th dose independent rect. 6 20
907 90.77 precipitation 0.1 30 < th dose dependent rect. 6 20
910 90.78 temperature 10.0 30 > th dose independent rect. 22 1
912 90.78 temperature 30.0 30 < th dose independent rect. 22 1
913 90.78 humidity 50.0 30 > th dose independent rect. 22 1
916 90.78 atmosphere 995.0 30 > th dose independent rect. 22 1
918 90.78 atmosphere 1010.0 30 < th dose independent rect. 22 1
920 90.78 radiation 1.0 30 < th dose independent rect. 22 1
925 90.78 precipitation 0.1 30 < th dose independent rect. 22 1
926 90.78 wind 9.0 1440 < th dose independent rect. 3 4
927 90.78 temperature 10.0 1440 > th dose independent rect. 3 4
930 90.78 temperature 30.0 1440 < th dose independent rect. 3 4
934 90.78 humidity 50.0 1440 > th dose independent rect. 3 4
939 90.78 atmosphere 995.0 1440 > th dose independent rect. 3 4
940 90.78 radiation 40.0 1440 < th dose independent rect. 3 4
946 90.78 temperature 10.0 1440 > th dose independent rect. 7 20
949 90.78 radiation 1.0 90 < th dose independent rect. 2 21
950 90.78 temperature 10.0 30 > th dose independent rect. 23 23
952 90.78 humidity 50.0 30 > th dose dependent rect. 22 1
955 90.78 radiation 1.0 30 < th dose dependent rect. 22 1
960 90.78 precipitation 0.1 30 < th dose dependent rect. 22 1
965 90.79 precipitation 0.1 30 < th dose independent rect. 2 4
968 90.79 humidity 50.0 720 > th dose independent rect. 5 6
969 90.79 wind 1.0 30 > th dose independent rect. 5 23
970 90.79 wind 9.0 30 < th dose independent rect. 23 23
971 90.79 precipitation 0.1 30 < th dose independent rect. 23 23
975 90.79 precipitation 0.1 30 < th dose dependent rect. 2 4
980 90.79 precipitation 0.1 30 < th dose dependent rect. 23 23
983 90.80 temperature 10.0 30 > th dose independent rect. 2 4
985 90.80 temperature 30.0 30 < th dose independent rect. 2 4
986 90.80 humidity 50.0 30 > th dose independent rect. 2 4
989 90.80 atmosphere 995.0 30 > th dose independent rect. 2 4
990 90.80 atmosphere 1010.0 30 < th dose independent rect. 2 4
995 90.80 precipitation 0.1 720 < th dose independent rect. 5 12