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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0660000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.85 (0.0376) R2 : 0.391
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.38 (0.0949) R2dC : 0.269 R2C : 0.269
β3 : -1.18 (0.128) R2dE : 0.129 R2E : 0.117
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0811) R2dN8 : 0.00239 R2N8 : -0.0073
σ : 0.7
deviance : 225.85
__
_____
C
peak time of C : 8.16
E
wheather : temperature
threshold : 17.3
memory length : 18336
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.12 0.679 3.72 0.386 1.34 -0.803 -2.3 1.72 0.287 8.15 20.2 16765 -- --
211.93 0.678 3.78 0.502 1.4 -1.32 -2.39 -- 0.344 8.05 19.42 16499 -- --
225.03 0.699 3.72 0.335 1.34 -0.792 -- 1.76 0.293 8.26 20.3 16724 -- --
226.7 0.701 3.79 0.365 1.35 -1.33 -- -- 0.302 8.08 19.2 19421 -- --
323.38 0.838 3.78 0.32 -- -0.999 -- 1.31 0.315 -- 19.27 16703 -- --
234.28 0.718 3.91 -0.812 1.35 -- -2.27 -- -0.192 8.2 -- -- -- --
249.97 0.74 3.91 -0.877 1.35 -- -- -- -0.189 8.3 -- -- -- --
323.63 0.838 3.84 0.455 -- -1.48 -- -- 0.283 -- 18.93 19548 -- --
225.85 0.7 3.85 -- 1.38 -1.18 -- -- 0.105 8.16 17.3 18336 -- --
350.71 0.875 3.95 -0.868 -- -- -- -- -0.175 -- -- -- -- --
270.22 0.769 3.89 -- 1.34 -- -- -- -0.0918 8.35 -- -- -- --
325.22 0.84 3.88 -- -- -1.14 -- -- 0.0884 -- 17.1 18290 -- --
370.57 0.899 3.93 -- -- -- -- -- -0.0785 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.51 humidity 80.0 14400 > th dose dependent rect. 14 1
2 203.32 radiation 1.0 720 > th dose independent rect. 4 1
12 203.32 radiation 1.0 720 > th dose dependent rect. 4 1
24 203.86 temperature 20.0 270 < th dose independent rect. 5 3
26 204.33 wind 9.0 14400 > th dose dependent rect. 10 1
30 204.87 humidity 80.0 14400 > th dose independent rect. 15 1
33 204.94 temperature 20.0 270 < th dose dependent rect. 4 4
37 205.32 wind 9.0 14400 > th dose independent rect. 6 5
41 205.48 wind 9.0 14400 > th dose independent rect. 9 2
46 205.88 humidity 80.0 14400 < th dose independent rect. 15 1
62 206.49 wind 9.0 14400 > th dose dependent rect. 6 5
66 206.60 humidity 90.0 14400 > th dose independent rect. 12 17
75 206.79 humidity 90.0 14400 < th dose independent rect. 12 17
81 206.90 humidity 80.0 14400 > th dose dependent rect. 12 17
119 207.24 humidity 90.0 14400 > th dose independent rect. 23 22
131 207.30 humidity 90.0 14400 > th dose independent rect. 22 20
143 207.36 temperature 25.0 14400 < th dose independent rect. 15 1
149 207.39 wind 1.0 43200 < th dose independent rect. 18 1
156 207.45 wind 9.0 14400 < th dose independent rect. 9 2
183 207.56 temperature 15.0 14400 > th dose independent rect. 13 15
197 207.63 temperature 10.0 720 > th dose dependent rect. 23 10
205 207.65 humidity 90.0 14400 > th dose independent rect. 20 22
213 207.69 wind 3.0 43200 > th dose independent rect. 22 1
219 207.72 humidity 90.0 14400 < th dose independent rect. 23 21
230 207.76 humidity 90.0 14400 > th dose independent sin 16 NA
242 207.79 wind 1.0 43200 > th dose independent rect. 18 1
243 207.79 temperature 25.0 14400 > th dose independent rect. 15 1
248 207.79 temperature 25.0 270 < th dose dependent rect. 1 9
250 207.80 humidity 90.0 14400 > th dose independent no NA NA
251 207.80 wind 3.0 43200 < th dose independent rect. 22 1
266 207.84 temperature 20.0 720 > th dose independent rect. 22 11
285 207.90 temperature 15.0 14400 > th dose independent sin 16 NA
290 207.91 humidity 90.0 14400 > th dose independent rect. 16 23
320 207.97 temperature 15.0 14400 < th dose independent rect. 13 15
322 207.97 temperature 30.0 14400 < th dose dependent rect. 13 1
342 208.01 humidity 90.0 14400 > th dose independent rect. 1 23
351 208.03 humidity 90.0 14400 > th dose independent rect. 4 23
395 208.13 temperature 30.0 720 < th dose dependent rect. 22 8
440 208.22 temperature 15.0 720 > th dose dependent rect. 24 1
450 208.25 humidity 80.0 14400 > th dose dependent sin 16 NA
457 208.27 humidity 90.0 14400 < th dose independent sin 15 NA
482 208.30 humidity 90.0 14400 < th dose independent rect. 19 22
502 208.35 temperature 15.0 14400 < th dose independent sin 15 NA
503 208.35 wind 3.0 43200 < th dose independent rect. 22 6
513 208.37 temperature 15.0 14400 < th dose independent rect. 12 19
531 208.39 humidity 80.0 14400 > th dose dependent rect. 22 20
537 208.41 radiation 1.0 43200 > th dose independent rect. 11 1
538 208.41 temperature 15.0 14400 > th dose independent rect. 20 2
552 208.43 temperature 15.0 14400 > th dose independent rect. 1 1
553 208.43 radiation 1.0 43200 < th dose independent rect. 11 1
558 208.43 radiation 1.0 43200 < th dose dependent rect. 11 1
574 208.47 humidity 90.0 14400 < th dose independent no NA NA
579 208.47 precipitation 0.1 43200 > th dose dependent rect. 1 7
590 208.49 temperature 10.0 14400 > th dose dependent rect. 14 1
604 208.51 wind 3.0 43200 < th dose dependent rect. 1 3
641 208.59 humidity 90.0 14400 < th dose independent rect. 2 23
663 208.63 precipitation 0.1 43200 > th dose independent rect. 1 7
669 208.64 precipitation 0.1 43200 < th dose independent rect. 1 7
675 208.64 wind 5.0 43200 < th dose dependent rect. 22 6
676 208.64 precipitation 0.1 43200 < th dose dependent rect. 1 7
681 208.65 humidity 90.0 14400 < th dose independent rect. 16 23
686 208.66 wind 9.0 14400 < th dose independent rect. 5 6
702 208.68 humidity 90.0 14400 > th dose independent sin 5 NA
756 208.75 wind 1.0 43200 < th dose dependent rect. 18 1
783 208.79 precipitation 0.1 43200 > th dose dependent rect. 23 9
802 208.82 temperature 15.0 14400 < th dose independent rect. 1 1
814 208.84 wind 3.0 43200 > th dose independent rect. 8 1
828 208.85 wind 3.0 43200 > th dose independent rect. 22 6
874 208.89 wind 5.0 43200 < th dose dependent rect. 22 1
876 208.90 precipitation 0.1 43200 > th dose independent rect. 23 9
884 208.91 precipitation 0.1 43200 < th dose independent rect. 23 9
890 208.91 precipitation 0.1 43200 < th dose dependent rect. 23 9
891 208.91 humidity 90.0 14400 > th dose dependent rect. 3 15
983 209.01 temperature 20.0 14400 > th dose independent rect. 8 1
998 209.02 wind 7.0 43200 < th dose dependent rect. 1 1