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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0659400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.85 (0.0144) R2 : 0.000911
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0195 (0.0303) R2dN8 : 0.00118 R2N8 : 0.000911
σ : 0.271
deviance : 33.72
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.32 0.265 26.7 -146 0.0395 6990 -0.0374 -42700 -0.0172 4.97 995 10 -- --
31.98 0.265 2.85 -0.00966 0.0369 1.31 -0.0446 -- -0.0179 4.79 994.8 20 -- --
32.32 0.265 26.7 -146 0.0394 6990 -- -42700 -0.0174 4.88 995 10 -- --
31.98 0.263 2.85 -0.00999 0.0374 1.31 -- -- -0.0176 4.69 994.8 20 -- --
32.4 0.265 26.7 -146 -- 6990 -- -42700 -0.0161 -- 995 10 -- --
33.67 0.272 2.85 -0.00215 0.0247 -- -0.0873 -- -0.0207 5.11 -- -- -- --
33.69 0.272 2.85 -0.00214 0.0241 -- -- -- -0.0203 4.75 -- -- -- --
32.05 0.264 2.85 -0.00848 -- 1.29 -- -- -0.0166 -- 994.8 20 -- --
31.98 0.263 2.85 -- 0.0371 1.31 -- -- -0.0165 4.7 994.8 20 -- --
33.72 0.271 2.85 -0.00123 -- -- -- -- -0.0197 -- -- -- -- --
33.69 0.271 2.85 -- 0.0241 -- -- -- -0.0201 4.75 -- -- -- --
32.05 0.264 2.85 -- -- 1.29 -- -- -0.0157 -- 994.8 20 -- --
33.72 0.271 2.85 -- -- -- -- -- -0.0195 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.09 radiation 10 90 < th dose dependent rect. 8 2
2 31.19 humidity 80 30 < th dose dependent rect. 19 1
7 31.21 wind 7 10 > th dose dependent rect. 9 1
63 31.51 radiation 20 270 > th dose dependent rect. 16 1
89 31.60 humidity 60 270 < th dose independent rect. 16 1
112 31.75 wind 7 10 > th dose independent rect. 9 1
122 31.77 radiation 10 90 < th dose independent rect. 8 2
123 31.77 humidity 60 270 < th dose dependent rect. 16 1
156 31.97 atmosphere 995 10 > th dose independent sin 6 NA
159 31.97 atmosphere 995 10 < th dose dependent sin 5 NA
162 31.97 atmosphere 995 10 < th dose dependent rect. 18 23
166 31.98 atmosphere 995 10 < th dose independent sin 5 NA
168 31.98 atmosphere 995 90 < th dose independent sin 6 NA
169 31.98 atmosphere 995 90 < th dose independent rect. 14 1
170 31.98 atmosphere 995 10 < th dose independent rect. 15 1
299 31.98 atmosphere 995 90 < th dose dependent rect. 14 1
300 31.98 atmosphere 995 10 < th dose dependent rect. 15 1
520 32.11 temperature 30 30 > th dose dependent rect. 16 1
557 32.15 humidity 80 30 < th dose independent rect. 19 1
569 32.16 temperature 30 10 > th dose dependent rect. 15 3
658 32.22 atmosphere 995 10 > th dose independent rect. 3 23
659 32.22 atmosphere 995 30 > th dose independent rect. 15 23
716 32.32 atmosphere 1005 90 < th dose independent rect. 18 1
717 32.32 atmosphere 995 10 < th dose dependent no NA NA
951 32.35 temperature 30 10 > th dose dependent sin 12 NA
961 32.36 atmosphere 995 10 < th dose dependent sin 18 NA
981 32.43 temperature 25 90 > th dose independent rect. 1 3
987 32.44 temperature 25 270 > th dose independent rect. 1 1
994 32.46 temperature 25 90 > th dose dependent rect. 2 2