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Os01g0656200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein phosphatase 2C family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0375) R2 : 0.839
β1 : 0.371 (0.137) R2dD : 0.00263 R2D : -0.00337
β2 : 3 (0.0993) R2dC : 0.332 R2C : 0.45
β3 : 2.2 (0.0709) R2dE : 0.354 R2E : 0.472
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -2.57 (0.288) R2dD*E : 0.0287 R2D*E : 0.0151
γ1 : -0.245 (0.08) R2dN8 : 0.00464 R2N8 : 0.00773
σ : 0.7
deviance : 225.92
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C
peak time of C : 18.4
E
wheather : radiation
threshold : 2.17
memory length : 89
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.05
open length of G : 11.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
223.38 0.702 10.9 0.356 3.01 2.21 -1.05 -2.58 -0.243 18.4 2.172 87 7.05 11.4
260.88 0.752 10.9 0.288 3.01 2.05 -1.29 -- -0.303 18.1 2.17 92 7.08 10.8
225.92 0.7 10.9 0.371 3 2.2 -- -2.57 -0.245 18.4 2.17 89 7.05 11.9
263.98 0.757 10.9 0.31 3.01 2.08 -- -- -0.276 18.1 2.42 92 7.03 10.7
315.27 0.827 10.8 0.399 -- 4.4 -- -2.77 -0.307 -- -29.09 502 6.45 10.8
316.55 0.834 10.8 0.374 4.38 -- -3.03 -- -0.3 16 -- -- -- --
342.87 0.867 10.9 0.336 4.37 -- -- -- -0.317 16 -- -- -- --
333.53 0.851 10.8 0.347 -- 4.4 -- -- -0.351 -- -11.86 529 6.03 11.1
266.26 0.76 10.9 -- 3.03 2.07 -- -- -0.327 18.2 2.427 96 7.02 10.7
1384.53 1.74 10.8 0.157 -- -- -- -- -0.434 -- -- -- -- --
345.84 0.87 10.9 -- 4.36 -- -- -- -0.355 16 -- -- -- --
335.97 0.854 10.8 -- -- 4.46 -- -- -0.388 -- -12.63 534 6.03 11
1385.18 1.74 10.8 -- -- -- -- -- -0.451 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.55 radiation 30.0 270 < th dose dependent rect. 15 15
3 228.95 radiation 1.0 90 > th dose independent rect. 7 11
24 235.42 radiation 10.0 270 < th dose independent rect. 15 16
30 237.28 radiation 1.0 720 > th dose independent rect. 13 5
47 238.58 radiation 20.0 90 < th dose dependent rect. 13 20
62 239.29 humidity 50.0 90 > th dose dependent rect. 17 15
82 240.27 radiation 1.0 720 < th dose independent rect. 15 6
91 241.10 radiation 10.0 90 < th dose dependent rect. 5 17
93 241.22 radiation 40.0 4320 < th dose dependent rect. 23 6
94 241.30 radiation 10.0 270 < th dose dependent rect. 2 18
105 242.24 radiation 1.0 720 > th dose independent sin 15 NA
117 243.40 radiation 1.0 270 < th dose independent rect. 3 17
120 243.46 radiation 20.0 90 < th dose dependent rect. 1 23
125 243.69 radiation 10.0 720 < th dose dependent rect. 14 8
128 244.04 radiation 1.0 720 < th dose independent rect. 11 18
129 244.06 radiation 10.0 270 < th dose dependent rect. 1 20
172 245.08 radiation 1.0 720 < th dose independent sin 17 NA
180 245.27 radiation 1.0 720 < th dose independent sin 14 NA
196 245.70 radiation 1.0 720 < th dose independent rect. 11 11
198 245.78 precipitation 0.1 270 < th dose independent rect. 6 10
199 245.78 precipitation 0.1 270 < th dose dependent rect. 6 10
207 245.97 humidity 50.0 270 > th dose independent rect. 16 14
209 245.99 temperature 10.0 270 > th dose independent rect. 6 10
210 245.99 atmosphere 1015.0 270 < th dose independent rect. 6 10
212 245.99 temperature 10.0 270 > th dose independent rect. 16 14
213 245.99 radiation 40.0 270 < th dose independent rect. 16 14
227 246.53 radiation 1.0 270 > th dose independent sin 1 NA
244 246.70 atmosphere 995.0 270 > th dose independent rect. 16 14
263 247.20 wind 9.0 270 < th dose independent rect. 6 10
275 247.47 wind 9.0 270 < th dose independent rect. 16 14
298 248.02 radiation 10.0 270 < th dose dependent rect. 23 23
312 248.33 radiation 1.0 90 > th dose independent sin 23 NA
327 248.66 radiation 10.0 720 < th dose dependent rect. 11 11
332 248.77 radiation 10.0 720 < th dose dependent sin 14 NA
333 248.77 radiation 10.0 90 < th dose dependent sin 23 NA
335 248.85 radiation 10.0 90 < th dose independent rect. 5 17
340 248.93 radiation 10.0 720 < th dose dependent sin 16 NA
346 249.01 radiation 1.0 270 < th dose independent rect. 1 20
360 249.24 radiation 10.0 1440 < th dose independent rect. 23 6
414 250.28 radiation 1.0 720 > th dose independent rect. 13 19
455 251.05 radiation 1.0 720 > th dose independent rect. 6 23
477 251.15 temperature 10.0 270 > th dose dependent rect. 20 6
481 251.18 humidity 90.0 270 < th dose independent rect. 21 4
536 251.42 radiation 20.0 90 < th dose dependent rect. 15 23
538 251.44 radiation 1.0 720 > th dose independent rect. 13 21
551 251.66 humidity 90.0 270 < th dose independent rect. 22 2
555 251.70 atmosphere 995.0 270 > th dose independent rect. 6 10
557 251.75 radiation 20.0 14400 < th dose independent rect. 23 7
584 252.07 radiation 1.0 720 > th dose independent rect. 11 23
604 252.38 radiation 20.0 90 < th dose dependent rect. 3 23
608 252.41 radiation 20.0 90 < th dose dependent no NA NA
624 252.73 humidity 50.0 270 > th dose dependent rect. 2 18
625 252.80 radiation 1.0 720 < th dose independent rect. 23 23
630 252.84 radiation 1.0 270 < th dose independent sin 1 NA
663 253.15 radiation 10.0 90 < th dose independent rect. 1 23
685 253.39 atmosphere 1005.0 270 > th dose independent rect. 21 5
714 253.69 wind 1.0 270 > th dose independent rect. 6 10
717 253.70 temperature 30.0 90 < th dose independent rect. 17 14
782 254.37 radiation 1.0 90 < th dose independent sin 23 NA
840 254.82 radiation 20.0 10 < th dose dependent rect. 3 21
906 255.31 radiation 40.0 270 < th dose dependent rect. 11 9
957 255.87 precipitation 0.1 270 < th dose independent rect. 16 14
958 255.87 precipitation 0.1 270 < th dose dependent rect. 16 14
1000 256.28 radiation 1.0 270 > th dose independent rect. 4 12