FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0654400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.96 (0.0464) R2 : 0.799
β1 : -1.87 (0.17) R2dD : 0.0563 R2D : 0.0585
β2 : 2.36 (0.153) R2dC : 0.173 R2C : 0.447
β3 : -2.77 (0.142) R2dE : 0.28 R2E : 0.562
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.383 (0.0987) R2dN8 : 0.00853 R2N8 : -0.000799
σ : 0.865
deviance : 344.95
__
_____
C
peak time of C : 19.4
E
wheather : temperature
threshold : 16.39
memory length : 249
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 17

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
326.99 0.85 5.95 -1.91 2.29 -2.82 0.393 2.63 -0.372 19.4 15.3 261 18 16.9
339.12 0.858 5.95 -1.92 2.43 -2.67 -1.61 -- -0.363 19.1 16.01 254 18 17
327.23 0.843 5.95 -1.92 2.28 -2.83 -- 2.46 -0.374 19.4 15.32 259 18 16.9
344.95 0.865 5.96 -1.87 2.36 -2.77 -- -- -0.383 19.4 16.39 249 18 17
447.45 0.985 5.94 -1.45 -- -3.42 -- 2.25 -0.0523 -- 15.31 333 19.7 14.6
465.6 1.01 5.98 -2.05 4.63 -- -2.61 -- -0.325 18 -- -- -- --
482.05 1.03 5.99 -2.03 4.62 -- -- -- -0.336 18 -- -- -- --
390.79 0.921 5.85 -1.75 -- -4.42 -- -- -0.292 -- 15.23 374 19.3 14.7
436.94 0.974 5.93 -- 2.35 -2.81 -- -- -0.181 19.4 16.4 229 18 17.1
1587.49 1.86 5.91 -2.16 -- -- -- -- -0.441 -- -- -- -- --
590.41 1.14 5.94 -- 4.65 -- -- -- -0.11 18 -- -- -- --
475.45 1.02 5.85 -- -- -4.43 -- -- -0.164 -- 15.9 370 19.3 14.9
1710.67 1.93 5.86 -- -- -- -- -- -0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 329.46 temperature 15.0 270 > th dose independent rect. 18 17
2 331.44 temperature 15.0 270 > th dose independent rect. 7 15
4 335.00 temperature 10.0 270 > th dose dependent rect. 5 7
7 337.43 temperature 15.0 90 > th dose dependent rect. 7 6
27 348.07 radiation 10.0 270 < th dose independent rect. 22 9
28 348.11 temperature 20.0 270 > th dose independent rect. 6 5
33 349.46 radiation 20.0 270 < th dose dependent rect. 22 9
40 350.09 temperature 20.0 270 > th dose independent rect. 5 7
41 350.12 temperature 15.0 270 > th dose independent rect. 16 8
65 353.37 temperature 10.0 90 > th dose dependent rect. 19 18
66 353.56 precipitation 0.1 270 < th dose independent rect. 22 9
67 353.56 precipitation 0.1 270 < th dose dependent rect. 22 9
70 353.87 temperature 15.0 270 > th dose independent rect. 16 21
73 354.17 temperature 10.0 10 > th dose dependent rect. 20 17
76 354.74 wind 7.0 270 < th dose independent rect. 22 9
78 354.95 humidity 70.0 270 > th dose independent rect. 22 9
80 355.06 atmosphere 995.0 270 > th dose independent rect. 17 18
83 355.26 temperature 10.0 270 > th dose independent rect. 22 9
84 355.26 temperature 30.0 270 < th dose independent rect. 22 9
85 355.26 humidity 50.0 270 > th dose independent rect. 22 9
87 355.26 atmosphere 995.0 270 > th dose independent rect. 22 9
92 355.62 humidity 50.0 270 > th dose independent rect. 17 18
95 355.76 atmosphere 995.0 270 > th dose independent rect. 18 16
96 355.87 wind 1.0 270 > th dose independent rect. 10 8
97 356.00 wind 9.0 270 < th dose independent rect. 7 15
104 357.18 wind 9.0 270 < th dose independent rect. 18 17
105 357.19 temperature 10.0 270 > th dose independent rect. 10 8
106 357.19 atmosphere 1015.0 270 < th dose independent rect. 10 8
109 357.30 humidity 50.0 270 > th dose independent rect. 18 16
128 358.20 precipitation 0.1 270 < th dose independent rect. 11 6
129 358.20 precipitation 0.1 270 < th dose dependent rect. 11 6
133 358.90 humidity 90.0 90 < th dose independent rect. 7 6
145 359.77 radiation 1.0 270 > th dose independent rect. 4 7
164 359.86 precipitation 0.1 270 < th dose independent rect. 17 18
165 359.86 precipitation 0.1 270 < th dose dependent rect. 17 18
167 360.03 wind 9.0 270 < th dose independent rect. 11 7
176 360.32 radiation 1.0 270 < th dose independent rect. 22 17
178 360.48 precipitation 0.1 270 < th dose independent rect. 7 15
179 360.48 precipitation 0.1 270 < th dose dependent rect. 7 15
180 360.49 wind 1.0 90 > th dose independent rect. 13 6
202 361.31 precipitation 0.1 270 < th dose independent rect. 12 17
203 361.31 precipitation 0.1 270 < th dose dependent rect. 12 17
207 361.45 radiation 40.0 90 < th dose independent rect. 13 18
222 362.08 radiation 40.0 90 < th dose independent rect. 12 7
231 362.31 atmosphere 995.0 270 > th dose independent rect. 7 15
233 362.40 wind 9.0 270 < th dose independent rect. 5 7
237 362.49 precipitation 0.1 270 < th dose independent rect. 5 7
239 362.49 precipitation 0.1 270 < th dose dependent rect. 5 7
253 362.77 atmosphere 1015.0 90 < th dose dependent rect. 13 6
257 362.92 temperature 10.0 90 > th dose independent rect. 13 6
259 362.92 atmosphere 1010.0 90 < th dose independent rect. 13 6
266 363.05 radiation 1.0 90 > th dose independent rect. 7 6
268 363.08 atmosphere 995.0 270 > th dose independent rect. 5 7
269 363.08 atmosphere 1015.0 270 < th dose independent rect. 5 7
270 363.08 temperature 10.0 270 > th dose independent rect. 12 17
273 363.20 atmosphere 1015.0 270 < th dose independent rect. 7 15
276 363.43 temperature 30.0 270 < th dose independent rect. 18 16
283 363.86 wind 9.0 270 < th dose independent rect. 12 17
288 364.21 atmosphere 1015.0 270 < th dose independent rect. 22 9
289 364.22 precipitation 0.1 270 < th dose independent rect. 11 19
291 364.22 precipitation 0.1 270 < th dose dependent rect. 11 19
295 364.36 atmosphere 995.0 270 > th dose independent rect. 11 6
301 364.71 precipitation 0.1 90 < th dose independent rect. 7 6
302 364.71 precipitation 0.1 90 < th dose dependent rect. 7 6
304 364.89 wind 9.0 90 < th dose independent rect. 7 6
306 364.93 humidity 50.0 270 > th dose independent rect. 5 7
309 365.04 atmosphere 995.0 90 > th dose independent rect. 7 6
310 365.04 atmosphere 1015.0 90 < th dose independent rect. 7 6
314 365.23 wind 9.0 90 < th dose independent rect. 13 6
350 366.23 temperature 10.0 270 > th dose independent rect. 11 19
351 366.24 radiation 1.0 270 < th dose dependent rect. 22 17
352 366.27 temperature 30.0 270 < th dose independent rect. 16 7
354 366.33 temperature 15.0 10 > th dose independent rect. 19 7
359 366.40 radiation 20.0 270 < th dose independent rect. 16 9
360 366.42 precipitation 0.1 90 < th dose independent rect. 13 6
361 366.42 precipitation 0.1 90 < th dose dependent rect. 13 6
362 366.44 radiation 20.0 10 < th dose dependent sin 3 NA
366 366.59 humidity 50.0 270 > th dose independent rect. 6 5
375 366.83 radiation 1.0 270 > th dose independent rect. 17 20
378 367.06 radiation 1.0 270 > th dose independent sin 7 NA
383 367.18 atmosphere 1000.0 270 > th dose independent rect. 17 6
409 367.57 wind 9.0 270 < th dose independent rect. 11 19
422 367.74 humidity 90.0 270 < th dose independent rect. 11 7
424 367.79 humidity 50.0 270 > th dose independent rect. 16 9
425 367.82 radiation 40.0 10 < th dose dependent rect. 13 19
431 368.05 radiation 1.0 270 > th dose independent rect. 7 3
473 368.72 atmosphere 995.0 270 > th dose independent rect. 16 9
493 369.25 wind 1.0 10 > th dose independent rect. 19 9
504 369.41 radiation 1.0 270 < th dose independent sin 7 NA
517 369.53 radiation 40.0 270 < th dose dependent rect. 16 9
518 369.57 atmosphere 1010.0 30 < th dose independent rect. 19 18
521 369.63 temperature 15.0 270 > th dose independent rect. 19 2
527 369.84 wind 9.0 270 < th dose dependent rect. 6 5
543 370.08 radiation 30.0 270 < th dose dependent rect. 16 7
556 370.20 precipitation 0.1 10 < th dose independent rect. 13 18
558 370.20 precipitation 0.1 10 < th dose dependent rect. 13 18
560 370.32 wind 1.0 90 > th dose independent rect. 7 6
563 370.36 wind 1.0 270 > th dose independent rect. 12 17
568 370.40 temperature 10.0 270 > th dose independent rect. 1 15
569 370.40 atmosphere 1015.0 270 < th dose independent rect. 1 15
572 370.49 atmosphere 995.0 90 > th dose independent rect. 13 6
574 370.50 wind 1.0 30 > th dose independent rect. 19 18
613 370.84 wind 1.0 270 > th dose independent rect. 11 19
615 370.91 temperature 10.0 1440 > th dose independent rect. 8 6
618 370.91 atmosphere 995.0 1440 > th dose independent rect. 8 6
619 370.91 temperature 10.0 1440 > th dose independent rect. 14 18
623 370.92 temperature 10.0 1440 > th dose independent rect. 14 6
627 370.92 temperature 10.0 1440 > th dose independent rect. 20 18
630 370.92 atmosphere 995.0 1440 > th dose independent rect. 20 18
649 371.18 wind 9.0 270 < th dose independent rect. 16 9
656 371.27 wind 9.0 10 < th dose independent rect. 7 6
657 371.30 wind 1.0 270 > th dose independent rect. 17 6
658 371.36 wind 9.0 270 < th dose dependent rect. 5 7
663 371.45 radiation 1.0 270 < th dose dependent sin 6 NA
669 371.52 wind 7.0 270 < th dose independent rect. 7 3
674 371.55 precipitation 0.1 270 < th dose independent rect. 7 3
675 371.55 precipitation 0.1 270 < th dose dependent rect. 7 3
693 371.71 temperature 10.0 270 > th dose independent rect. 23 18
704 371.92 atmosphere 995.0 270 > th dose independent rect. 7 3
705 371.92 atmosphere 1015.0 270 < th dose independent rect. 7 3
706 371.92 temperature 10.0 270 > th dose independent rect. 10 21
712 371.94 precipitation 0.1 270 < th dose independent rect. 1 15
713 371.94 precipitation 0.1 270 < th dose dependent rect. 1 15
714 371.95 humidity 50.0 270 > th dose independent rect. 7 3
724 372.09 radiation 20.0 10 < th dose dependent rect. 24 19
726 372.10 atmosphere 1015.0 270 < th dose independent rect. 23 18
747 372.39 radiation 20.0 90 < th dose dependent rect. 23 19
749 372.40 wind 1.0 90 > th dose dependent rect. 13 6
757 372.52 wind 9.0 270 < th dose independent rect. 17 6
767 372.63 atmosphere 995.0 270 > th dose dependent rect. 23 7
780 372.86 wind 1.0 270 > th dose independent rect. 16 8
794 372.96 precipitation 0.1 270 < th dose independent rect. 23 18
795 372.96 precipitation 0.1 270 < th dose dependent rect. 23 18
806 373.10 radiation 1.0 270 > th dose independent rect. 11 6
843 373.52 wind 1.0 270 > th dose independent rect. 7 15
844 373.55 atmosphere 1015.0 10 < th dose dependent rect. 13 7
846 373.59 radiation 1.0 270 > th dose independent rect. 11 8
860 373.72 wind 1.0 270 > th dose independent rect. 24 17
861 373.74 radiation 20.0 10 < th dose dependent rect. 2 17
870 373.88 precipitation 0.1 270 < th dose independent rect. 17 6
871 373.88 precipitation 0.1 270 < th dose dependent rect. 17 6
872 373.89 wind 9.0 270 < th dose independent rect. 1 15
895 374.06 atmosphere 995.0 90 > th dose independent rect. 13 18
942 374.63 atmosphere 1010.0 270 < th dose independent rect. 17 6
947 374.68 atmosphere 995.0 270 > th dose independent rect. 16 21
949 374.70 atmosphere 1015.0 90 < th dose independent rect. 13 18
959 374.88 precipitation 0.1 270 < th dose independent rect. 16 9
961 374.88 precipitation 0.1 270 < th dose dependent rect. 16 9
969 374.96 atmosphere 995.0 270 > th dose independent rect. 1 15
972 374.97 wind 9.0 270 < th dose independent rect. 23 18
998 375.18 wind 1.0 270 > th dose independent rect. 23 7