Os01g0654300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AGL221Wp.
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Os01g0654300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AGL221Wp.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.23 | 0.241 | 9.83 | -1.22 | 0.535 | -0.737 | -0.208 | 1.13 | -0.14 | 4.15 | 23.2 | 1425 | -- | -- |
| 27.93 | 0.246 | 9.82 | -1.14 | 0.541 | -0.805 | -0.137 | -- | -0.121 | 4.19 | 21.8 | 2684 | -- | -- |
| 26.33 | 0.239 | 9.83 | -1.22 | 0.53 | -0.734 | -- | 1.16 | -0.138 | 4.17 | 23.13 | 1377 | -- | -- |
| 27.52 | 0.244 | 9.81 | -1.07 | 0.538 | -0.977 | -- | -- | -0.113 | 4.13 | 22.6 | 1421 | -- | -- |
| 40.85 | 0.298 | 9.85 | -1.27 | -- | -0.746 | -- | 1.32 | -0.18 | -- | 25.39 | 1166 | -- | -- |
| 36.68 | 0.284 | 9.78 | -0.811 | 0.559 | -- | -0.324 | -- | 0.0383 | 4.15 | -- | -- | -- | -- |
| 36.98 | 0.285 | 9.78 | -0.807 | 0.556 | -- | -- | -- | 0.0401 | 4.12 | -- | -- | -- | -- |
| 42.15 | 0.302 | 9.81 | -1.07 | -- | -1.02 | -- | -- | -0.11 | -- | 22.93 | 1243 | -- | -- |
| 52.41 | 0.339 | 9.76 | -- | 0.575 | -0.374 | -- | -- | 0.0934 | 3.89 | 22.6 | 1421 | -- | -- |
| 53.79 | 0.343 | 9.78 | -0.785 | -- | -- | -- | -- | 0.0549 | -- | -- | -- | -- | -- |
| 54.15 | 0.344 | 9.75 | -- | 0.541 | -- | -- | -- | 0.13 | 4.15 | -- | -- | -- | -- |
| 67.53 | 0.383 | 9.77 | -- | -- | -0.418 | -- | -- | 0.0838 | -- | 23.31 | 1156 | -- | -- |
| 70.03 | 0.391 | 9.76 | -- | -- | -- | -- | -- | 0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 14 |
| 14 | 26.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 20 | 26.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 14 | 14 |
| 23 | 26.34 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 27 | 26.35 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 39 | 26.38 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 46 | 26.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 128 | 26.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 14 |
| 137 | 26.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 16 |
| 224 | 26.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 255 | 26.65 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 293 | 26.67 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 444 | 26.86 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 3 |
| 459 | 26.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 475 | 26.90 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 512 | 26.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 19 |
| 530 | 26.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 19 |
| 531 | 26.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 537 | 26.97 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 19 |
| 595 | 27.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 597 | 27.02 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 618 | 27.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 641 | 27.06 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 703 | 27.11 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 732 | 27.12 | radiation | 1 | 4320 | < th | dose dependent | rect. | 6 | 6 |
| 777 | 27.15 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 796 | 27.16 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 2 |
| 814 | 27.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 838 | 27.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 921 | 27.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |