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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0652800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF231, plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.97 (0.061) R2 : 0.604
β1 : -5.71 (0.229) R2dD : 0.59 R2D : 0.363
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.87 (0.167) R2dE : 0.116 R2E : -0.00643
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.21 (0.131) R2dN8 : 0.102 R2N8 : 0.0206
σ : 1.14
deviance : 599.78
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 28.03
memory length : 1256
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
572.48 1.12 6.02 -6.26 0.522 2.06 2.15 -2.96 -1.22 4.32 28.6 1265 -- --
573.14 1.12 5.95 -5.68 0.519 1.75 2.09 -- -1.19 4.36 28.4 1257 -- --
584.94 1.13 6.01 -6.24 0.543 2.07 -- -2.76 -1.2 4.57 28.69 1257 -- --
585.05 1.13 5.96 -5.7 0.531 1.79 -- -- -1.21 4.82 28.35 1256 -- --
599.93 1.14 6 -6.16 -- 2.11 -- -2.36 -1.2 -- 28.49 1257 -- --
714.72 1.25 5.99 -5.15 0.73 -- 2.48 -- -1.34 3.64 -- -- -- --
733.48 1.27 5.99 -5.19 0.744 -- -- -- -1.36 3.65 -- -- -- --
599.78 1.14 5.97 -5.71 -- 1.87 -- -- -1.21 -- 28.03 1256 -- --
1392.62 1.74 5.83 -- 0.547 1.14 -- -- -0.613 4.21 33.9 1009 -- --
764.18 1.29 6 -5.16 -- -- -- -- -1.34 -- -- -- -- --
1444.47 1.78 5.86 -- 0.642 -- -- -- -0.78 3.72 -- -- -- --
1407.36 1.75 5.82 -- -- 1.13 -- -- -0.562 -- 33.5 1060 -- --
1467.28 1.79 5.87 -- -- -- -- -- -0.766 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 574.39 radiation 20 1440 > th dose independent rect. 16 16
2 576.24 temperature 30 1440 > th dose dependent sin 13 NA
6 576.58 radiation 20 1440 > th dose dependent rect. 16 16
7 576.67 radiation 20 1440 < th dose independent rect. 16 13
8 576.73 radiation 20 1440 < th dose independent rect. 16 11
12 577.01 temperature 30 1440 > th dose dependent rect. 15 19
13 577.05 radiation 20 1440 < th dose independent rect. 16 2
14 577.13 temperature 30 1440 > th dose dependent rect. 15 4
66 577.59 radiation 20 1440 < th dose independent rect. 16 9
73 577.81 humidity 60 1440 > th dose independent sin 15 NA
92 578.08 radiation 20 1440 < th dose independent rect. 16 6
93 578.13 humidity 70 1440 < th dose dependent rect. 16 15
94 578.16 humidity 70 1440 < th dose dependent rect. 16 4
115 578.35 humidity 70 1440 < th dose dependent sin 13 NA
140 578.82 humidity 60 1440 > th dose independent rect. 12 7
161 579.11 radiation 30 1440 > th dose independent rect. 7 1
177 579.17 humidity 60 1440 > th dose independent rect. 12 17
192 579.18 humidity 60 1440 > th dose independent rect. 12 15
196 579.25 humidity 60 1440 > th dose independent rect. 12 13
198 579.27 humidity 60 1440 > th dose independent rect. 12 19
200 579.29 temperature 30 1440 > th dose dependent no NA NA
292 579.30 temperature 30 1440 > th dose independent rect. 16 3
300 579.30 humidity 60 1440 > th dose independent rect. 12 10
322 579.64 temperature 30 1440 > th dose independent sin 12 NA
336 579.68 humidity 60 1440 < th dose independent sin 15 NA
364 580.03 temperature 30 1440 < th dose independent sin 12 NA
380 580.12 temperature 30 1440 < th dose independent rect. 16 13
390 580.18 radiation 20 1440 > th dose independent rect. 16 1
405 580.23 temperature 30 1440 < th dose independent rect. 16 11
406 580.25 temperature 30 1440 < th dose independent rect. 16 15
427 580.39 temperature 30 1440 < th dose independent rect. 16 6
429 580.40 temperature 30 1440 < th dose independent rect. 16 3
433 580.44 temperature 30 1440 < th dose independent rect. 16 9
439 580.56 humidity 60 1440 < th dose independent rect. 12 7
440 580.56 temperature 25 720 > th dose dependent rect. 18 15
461 581.03 humidity 70 1440 < th dose independent rect. 18 13
471 581.34 humidity 70 1440 < th dose independent rect. 18 2
483 581.40 temperature 30 1440 < th dose independent rect. 16 20
502 581.75 temperature 30 1440 > th dose independent rect. 17 21
519 581.83 humidity 50 4320 > th dose independent rect. 13 4
584 582.61 radiation 30 1440 < th dose independent rect. 24 8
608 582.83 radiation 30 1440 < th dose independent rect. 7 1
695 583.70 radiation 30 1440 < th dose independent rect. 21 11
704 583.83 radiation 10 1440 > th dose dependent rect. 16 1
713 584.16 temperature 25 720 > th dose dependent rect. 21 2
809 585.13 temperature 30 1440 > th dose independent rect. 9 10
823 585.17 temperature 30 1440 < th dose independent rect. 9 20
824 585.20 temperature 30 1440 < th dose independent rect. 9 18
827 585.21 temperature 30 1440 < th dose independent rect. 9 22
829 585.25 temperature 30 1440 < th dose independent rect. 9 10
830 585.25 temperature 30 1440 < th dose independent rect. 9 14
834 585.26 temperature 30 1440 < th dose independent rect. 9 16
854 585.41 temperature 30 1440 < th dose independent rect. 13 23
861 585.61 radiation 20 4320 > th dose dependent rect. 6 2
879 585.69 temperature 30 1440 > th dose independent rect. 13 23
887 585.88 temperature 30 1440 < th dose independent rect. 6 23
888 585.90 temperature 30 1440 < th dose independent rect. 2 17
889 585.90 temperature 30 1440 < th dose independent rect. 2 20
891 585.90 temperature 30 1440 < th dose independent rect. 6 21
899 585.92 temperature 30 1440 < th dose independent rect. 11 23
901 585.93 temperature 30 1440 < th dose independent rect. 21 22
906 585.94 temperature 30 1440 < th dose independent rect. 4 23
909 585.94 temperature 30 1440 < th dose independent rect. 24 23
911 585.95 temperature 30 1440 < th dose independent rect. 6 13
920 585.96 temperature 30 1440 < th dose independent no NA NA
921 585.96 temperature 30 1440 < th dose independent rect. 6 16
946 585.99 temperature 30 1440 < th dose independent rect. 4 15
957 586.00 temperature 30 1440 < th dose independent rect. 4 18
983 586.06 temperature 30 1440 > th dose independent rect. 11 23