Os01g0652700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF538 family protein.
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Os01g0652700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF538 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 158.2 | 0.591 | 3.38 | 0.0464 | 0.584 | 0.381 | -0.458 | -0.553 | 0.0365 | 15.9 | 24.6 | 237 | -- | -- |
| 158.44 | 0.586 | 3.4 | -0.113 | 0.551 | 0.344 | -0.24 | -- | -0.02 | 15.6 | 24.4 | 137 | -- | -- |
| 158.69 | 0.587 | 3.38 | -0.0107 | 0.585 | 0.379 | -- | -0.377 | 0.0179 | 16 | 24.57 | 236 | -- | -- |
| 158.53 | 0.586 | 3.39 | -0.127 | 0.575 | 0.364 | -- | -- | -0.0155 | 15.7 | 24.39 | 137 | -- | -- |
| 164.74 | 0.598 | 3.36 | 0.279 | -- | 0.571 | -- | -1.5 | 0.0723 | -- | 25.5 | 1218 | -- | -- |
| 165.92 | 0.604 | 3.44 | -0.242 | 0.379 | -- | -0.333 | -- | -0.21 | 15.5 | -- | -- | -- | -- |
| 166.26 | 0.604 | 3.44 | -0.248 | 0.378 | -- | -- | -- | -0.212 | 15.6 | -- | -- | -- | -- |
| 170.68 | 0.608 | 3.36 | 0.285 | -- | 0.609 | -- | -- | 0.052 | -- | 25.3 | 1210 | -- | -- |
| 158.94 | 0.587 | 3.39 | -- | 0.587 | 0.382 | -- | -- | 0.00752 | 15.7 | 24.37 | 137 | -- | -- |
| 174.21 | 0.617 | 3.44 | -0.264 | -- | -- | -- | -- | -0.222 | -- | -- | -- | -- | -- |
| 167.89 | 0.606 | 3.43 | -- | 0.383 | -- | -- | -- | -0.184 | 15.6 | -- | -- | -- | -- |
| 166.97 | 0.602 | 3.39 | -- | -- | 0.516 | -- | -- | -0.0292 | -- | 25.09 | 1204 | -- | -- |
| 176.05 | 0.619 | 3.43 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.96 | radiation | 1.0 | 10 | < th | dose independent | rect. | 6 | 1 |
| 3 | 145.13 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 6 | 1 |
| 5 | 150.83 | wind | 3.0 | 90 | > th | dose independent | rect. | 5 | 1 |
| 7 | 150.95 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 3 |
| 9 | 151.16 | wind | 3.0 | 90 | > th | dose dependent | rect. | 5 | 1 |
| 14 | 151.38 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 5 | 2 |
| 15 | 151.38 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 22 | 151.47 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 4 | 4 |
| 26 | 151.49 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 4 | 2 |
| 31 | 151.49 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 4 | 2 |
| 202 | 154.50 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 5 | 19 |
| 204 | 154.50 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 213 | 154.70 | radiation | 1.0 | 10 | < th | dose independent | rect. | 5 | 9 |
| 215 | 154.70 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 8 | 16 |
| 219 | 154.98 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 15 |
| 225 | 155.11 | wind | 5.0 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 233 | 155.31 | temperature | 25.0 | 90 | < th | dose independent | rect. | 10 | 20 |
| 237 | 155.33 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 248 | 155.35 | wind | 3.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 252 | 155.39 | wind | 5.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 259 | 155.47 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 3 |
| 272 | 155.56 | wind | 7.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 284 | 155.73 | wind | 5.0 | 270 | > th | dose independent | rect. | 1 | 8 |
| 310 | 155.93 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 20 |
| 327 | 156.08 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 21 | 6 |
| 328 | 156.09 | wind | 1.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 347 | 156.17 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 14 | 12 |
| 362 | 156.20 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 17 | 9 |
| 404 | 156.33 | temperature | 20.0 | 30 | < th | dose dependent | sin | 18 | NA |
| 407 | 156.34 | wind | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 453 | 156.54 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 6 | 23 |
| 481 | 156.78 | temperature | 25.0 | 90 | < th | dose independent | rect. | 10 | 14 |
| 492 | 156.80 | radiation | 10.0 | 10 | > th | dose independent | rect. | 13 | 19 |
| 523 | 156.96 | temperature | 20.0 | 90 | > th | dose independent | rect. | 13 | 14 |
| 535 | 156.99 | wind | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 543 | 157.02 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 5 |
| 555 | 157.07 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 5 | 1 |
| 584 | 157.17 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 608 | 157.25 | precipitation | 0.1 | 10 | > th | dose dependent | sin | 0 | NA |
| 613 | 157.30 | precipitation | 0.1 | 10 | > th | dose independent | sin | 0 | NA |
| 621 | 157.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 626 | 157.34 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 10 | 14 |
| 633 | 157.36 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 635 | 157.36 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 646 | 157.40 | radiation | 10.0 | 10 | > th | dose independent | rect. | 13 | 5 |
| 666 | 157.43 | wind | 5.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 672 | 157.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 673 | 157.44 | wind | 9.0 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 676 | 157.46 | radiation | 10.0 | 10 | > th | dose independent | sin | 13 | NA |
| 683 | 157.48 | precipitation | 0.1 | 90 | > th | dose independent | sin | 5 | NA |
| 699 | 157.52 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 13 | 15 |
| 700 | 157.54 | precipitation | 0.1 | 270 | > th | dose independent | sin | 8 | NA |
| 715 | 157.57 | wind | 5.0 | 270 | < th | dose independent | sin | 9 | NA |
| 719 | 157.59 | wind | 5.0 | 270 | > th | dose independent | sin | 9 | NA |
| 721 | 157.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 24 | 3 |
| 724 | 157.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 24 | 3 |
| 728 | 157.61 | wind | 5.0 | 720 | > th | dose dependent | rect. | 18 | 7 |
| 730 | 157.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 24 | 3 |
| 736 | 157.64 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 22 | 10 |
| 738 | 157.64 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 8 | NA |
| 742 | 157.65 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 21 |
| 745 | 157.65 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 749 | 157.67 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 23 | 12 |
| 752 | 157.68 | wind | 5.0 | 720 | > th | dose independent | rect. | 18 | 8 |
| 753 | 157.68 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 23 | 12 |
| 768 | 157.71 | precipitation | 0.1 | 270 | < th | dose independent | sin | 9 | NA |
| 770 | 157.71 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 9 | NA |
| 790 | 157.76 | wind | 5.0 | 720 | < th | dose independent | rect. | 19 | 7 |
| 798 | 157.78 | wind | 5.0 | 720 | > th | dose independent | rect. | 19 | 5 |
| 800 | 157.78 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 2 | 9 |
| 816 | 157.81 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 1 | 7 |
| 818 | 157.81 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 2 | 9 |
| 822 | 157.81 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 832 | 157.82 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 5 | 9 |
| 841 | 157.84 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 6 | NA |
| 861 | 157.87 | temperature | 25.0 | 270 | > th | dose independent | rect. | 10 | 21 |
| 873 | 157.90 | wind | 3.0 | 10 | > th | dose independent | rect. | 2 | 5 |
| 880 | 157.90 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 13 | 15 |
| 910 | 157.94 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 915 | 157.94 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 956 | 157.99 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 19 |
| 961 | 158.00 | atmosphere | 1005.0 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 964 | 158.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 22 | 7 |
| 965 | 158.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 988 | 158.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 990 | 158.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 991 | 158.05 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 21 |