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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0652000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.42 (0.0435) R2 : 0.2
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.778 (0.11) R2dC : 0.089 R2C : 0.0995
β3 : 3.37 (0.492) R2dE : 0.0833 R2E : 0.0947
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.22 (0.0915) R2dN8 : 0.0131 R2N8 : 0.0146
σ : 0.814
deviance : 305.71
__
_____
C
peak time of C : 20.5
E
wheather : temperature
threshold : 14.6
memory length : 1437
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
297.49 0.81 4.7 3.35 0.775 109 0.527 223 -0.141 20.5 14.97 1361 -- --
314.61 0.832 3.42 0.313 0.801 3.38 0.325 -- -0.212 20.3 14.97 1361 -- --
298.37 0.805 4.7 3.33 0.774 109 -- 223 -0.142 20.5 14.97 1360 -- --
299.07 0.805 3.41 0.53 0.784 3.71 -- -- -0.173 20.4 14.6 1459 -- --
331.79 0.848 4.74 3.46 -- 114 -- 233 -0.155 -- 15 1362 -- --
336.41 0.86 3.43 0.174 0.835 -- 0.00549 -- -0.246 20.5 -- -- -- --
336.41 0.859 3.43 0.174 0.835 -- -- -- -0.246 20.5 -- -- -- --
332.04 0.849 3.4 0.535 -- 4.1 -- -- -0.177 -- 14.7 1459 -- --
305.71 0.814 3.42 -- 0.778 3.37 -- -- -0.22 20.5 14.6 1437 -- --
375.43 0.905 3.41 0.171 -- -- -- -- -0.254 -- -- -- -- --
337.21 0.859 3.43 -- 0.834 -- -- -- -0.265 20.5 -- -- -- --
339.24 0.858 3.4 -- -- 3.62 -- -- -0.223 -- 14.66 1459 -- --
376.2 0.905 3.41 -- -- -- -- -- -0.273 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.72 temperature 25 720 < th dose dependent rect. 11 5
3 291.49 radiation 1 720 < th dose dependent rect. 13 3
5 291.55 temperature 25 720 < th dose dependent rect. 13 3
6 291.58 radiation 1 720 < th dose dependent rect. 10 6
8 291.64 temperature 20 1440 < th dose independent rect. 14 3
12 292.43 temperature 20 1440 < th dose independent rect. 15 1
24 293.43 temperature 20 720 < th dose independent rect. 11 5
45 295.45 temperature 10 720 > th dose dependent rect. 10 9
49 295.70 temperature 25 720 < th dose dependent sin 22 NA
60 296.55 temperature 15 1440 > th dose independent rect. 19 7
61 296.66 temperature 15 1440 > th dose independent rect. 6 21
65 296.74 temperature 15 1440 > th dose independent rect. 13 14
74 297.05 temperature 15 1440 < th dose dependent rect. 21 5
75 297.06 temperature 15 1440 < th dose independent rect. 19 7
78 297.08 temperature 20 10 < th dose dependent sin 17 NA
93 297.25 humidity 90 720 > th dose independent rect. 10 7
121 297.48 temperature 15 1440 < th dose independent rect. 10 16
126 297.49 temperature 15 1440 < th dose dependent sin 12 NA
144 297.61 humidity 90 720 > th dose dependent rect. 10 9
150 297.63 humidity 90 720 > th dose dependent rect. 15 2
154 297.64 temperature 15 1440 < th dose dependent rect. 19 19
158 297.64 temperature 15 1440 < th dose dependent rect. 21 22
161 297.65 temperature 15 1440 > th dose independent rect. 8 19
162 297.65 temperature 20 90 < th dose dependent rect. 12 11
192 297.71 temperature 15 1440 < th dose dependent rect. 9 18
214 297.76 temperature 15 1440 > th dose independent rect. 10 17
269 297.80 temperature 10 720 > th dose dependent sin 22 NA
282 297.82 temperature 15 1440 < th dose independent rect. 23 2
320 297.85 temperature 15 1440 < th dose dependent no NA NA
347 297.87 temperature 15 1440 < th dose independent sin 15 NA
360 297.92 humidity 90 720 > th dose dependent rect. 10 7
389 298.03 temperature 20 10 < th dose dependent rect. 12 12
394 298.06 radiation 1 720 < th dose independent rect. 14 1
404 298.12 temperature 15 1440 > th dose independent sin 15 NA
435 298.33 temperature 10 720 > th dose dependent rect. 7 15
440 298.36 temperature 15 1440 < th dose dependent rect. 23 2
507 298.61 temperature 20 10 < th dose dependent rect. 12 17
508 298.62 temperature 15 1440 < th dose independent no NA NA
516 298.62 temperature 15 1440 < th dose independent rect. 17 22
549 298.74 temperature 15 1440 < th dose independent rect. 21 23
564 298.77 temperature 20 10 < th dose dependent rect. 15 9
591 298.88 temperature 15 1440 < th dose dependent rect. 1 18
612 298.94 humidity 90 720 > th dose independent rect. 15 2
624 298.98 temperature 15 1440 < th dose dependent sin 3 NA
626 298.99 temperature 15 1440 > th dose independent rect. 13 23
632 299.03 temperature 15 1440 > th dose independent rect. 21 23
679 299.21 temperature 15 1440 > th dose independent rect. 13 20
683 299.23 temperature 20 10 < th dose dependent rect. 15 14
704 299.32 temperature 20 90 < th dose independent sin 19 NA
711 299.34 humidity 90 720 > th dose independent rect. 10 9
720 299.37 temperature 15 1440 > th dose independent rect. 22 2
754 299.59 temperature 15 1440 > th dose independent rect. 8 23
759 299.63 temperature 20 720 > th dose independent rect. 8 12
794 299.76 temperature 15 1440 > th dose independent rect. 10 21
797 299.78 temperature 20 720 > th dose independent rect. 10 7
827 299.88 temperature 15 1440 > th dose independent no NA NA
840 299.95 temperature 15 1440 > th dose independent rect. 16 23
843 299.96 temperature 20 720 > th dose independent sin 22 NA
873 299.98 temperature 20 720 > th dose independent rect. 9 10
875 299.99 radiation 1 720 < th dose independent rect. 10 5
879 300.02 temperature 20 720 < th dose independent sin 22 NA
922 300.20 temperature 20 720 > th dose independent rect. 7 14
923 300.21 temperature 15 1440 < th dose independent sin 3 NA
927 300.23 humidity 90 720 > th dose dependent rect. 13 4
932 300.27 temperature 15 1440 > th dose independent rect. 2 23
934 300.28 temperature 15 1440 > th dose independent rect. 18 23
947 300.35 humidity 90 720 > th dose dependent rect. 13 6
956 300.39 humidity 90 720 > th dose independent rect. 13 4
957 300.40 temperature 20 90 > th dose independent sin 19 NA
962 300.41 humidity 90 720 < th dose independent rect. 10 9
981 300.51 temperature 20 720 < th dose independent rect. 8 11