Os01g0651500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0651500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.58 | 0.652 | 3.06 | 11.5 | 1.06 | -11.8 | 0.199 | 123 | -0.256 | 7.79 | 30.1 | 849 | 18 | 0.859 |
| 269.45 | 0.77 | 4.41 | -0.739 | 1.39 | 0.269 | 0.894 | -- | -0.416 | 6.87 | 30.1 | 849 | 18 | 0.859 |
| 192.63 | 0.646 | 3.06 | 11.5 | 1.06 | -11.8 | -- | 123 | -0.255 | 7.78 | 30.09 | 860 | 18 | 12.2 |
| 199.55 | 0.658 | 4.34 | -0.961 | 1.14 | 1.52 | -- | -- | -0.242 | 8.37 | 26.43 | 790 | 18 | 5.13 |
| 251.81 | 0.739 | 3.06 | 11.6 | -- | -11.9 | -- | 125 | -0.202 | -- | 29.94 | 935 | 18.1 | 12.8 |
| 269.65 | 0.77 | 4.42 | -0.736 | 1.38 | -- | 0.871 | -- | -0.419 | 6.87 | -- | -- | -- | -- |
| 271.6 | 0.772 | 4.42 | -0.72 | 1.39 | -- | -- | -- | -0.421 | 6.89 | -- | -- | -- | -- |
| 246.22 | 0.731 | 4.4 | -0.902 | -- | 2.14 | -- | -- | -0.145 | -- | 26.49 | 774 | 20.1 | 3.07 |
| 219.55 | 0.69 | 4.37 | -- | 1.12 | 1.52 | -- | -- | -0.196 | 8.22 | 26.2 | 716 | 18.7 | 4.42 |
| 372.21 | 0.901 | 4.45 | -0.69 | -- | -- | -- | -- | -0.395 | -- | -- | -- | -- | -- |
| 285.26 | 0.79 | 4.4 | -- | 1.38 | -- | -- | -- | -0.341 | 6.92 | -- | -- | -- | -- |
| 269.54 | 0.765 | 4.39 | -- | -- | 1.93 | -- | -- | -0.14 | -- | 26.21 | 743 | 20.3 | 2.62 |
| 384.78 | 0.916 | 4.43 | -- | -- | -- | -- | -- | -0.318 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.63 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 32 | 202.85 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 33 | 202.85 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 47 | 203.18 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 49 | 203.78 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 13 |
| 50 | 204.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 53 | 205.06 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 56 | 205.77 | humidity | 70 | 720 | < th | dose independent | rect. | 19 | 1 |
| 67 | 205.93 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 69 | 206.19 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 70 | 206.25 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 75 | 206.96 | humidity | 70 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 124 | 208.84 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 151 | 209.20 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 161 | 210.30 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 2 |
| 162 | 210.33 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 167 | 210.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 4 |
| 169 | 210.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 185 | 211.79 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 186 | 211.88 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 194 | 212.46 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 15 |
| 226 | 214.25 | radiation | 40 | 1440 | > th | dose dependent | sin | 12 | NA |
| 272 | 215.76 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 278 | 216.04 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 301 | 216.19 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 335 | 216.73 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 361 | 217.07 | humidity | 60 | 720 | > th | dose dependent | rect. | 18 | 6 |
| 362 | 217.12 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 369 | 217.37 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |
| 370 | 217.37 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 407 | 217.55 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 419 | 217.83 | radiation | 10 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 453 | 218.05 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 523 | 218.33 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 22 |
| 526 | 218.38 | radiation | 10 | 1440 | > th | dose dependent | sin | 10 | NA |
| 530 | 218.44 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 18 |
| 542 | 218.67 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 549 | 218.79 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 1 |
| 574 | 218.83 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 3 |
| 645 | 219.00 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 649 | 219.02 | wind | 7 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 688 | 219.35 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 730 | 219.50 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 818 | 219.82 | radiation | 40 | 1440 | > th | dose dependent | rect. | 8 | 7 |
| 838 | 219.83 | radiation | 40 | 1440 | > th | dose dependent | no | NA | NA |
| 976 | 219.85 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 18 |