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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0651400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.68 (0.0275) R2 : 0.235
β1 : 0.797 (0.104) R2dD : 0.114 R2D : 0.0209
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.3 (0.125) R2dE : 0.234 R2E : 0.121
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.123 (0.0632) R2dN8 : 0.0104 R2N8 : -0.0344
σ : 0.502
deviance : 116.2
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.3
memory length : 716
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
108.61 0.49 3.66 0.899 0.349 1.09 0.677 -0.996 0.1 8.63 23.99 779 -- --
109.88 0.488 3.67 0.835 0.371 1.31 0.548 -- 0.0858 8.28 23.32 851 -- --
109.9 0.488 3.67 0.863 0.341 1.12 -- -0.641 0.082 8.56 23.85 778 -- --
110.29 0.489 3.68 0.782 0.339 1.26 -- -- 0.0644 8.49 23.5 781 -- --
115.51 0.501 3.67 0.889 -- 1.24 -- -0.61 0.144 -- 25.57 714 -- --
130.49 0.536 3.73 0.417 0.471 -- 0.376 -- -0.157 9.08 -- -- -- --
130.98 0.536 3.73 0.43 0.469 -- -- -- -0.157 9.11 -- -- -- --
116.2 0.502 3.68 0.797 -- 1.3 -- -- 0.123 -- 25.3 716 -- --
123.66 0.518 3.71 -- 0.373 0.903 -- -- -0.0753 8.85 23.56 649 -- --
143.68 0.56 3.74 0.429 -- -- -- -- -0.154 -- -- -- -- --
135.86 0.545 3.74 -- 0.469 -- -- -- -0.205 9.04 -- -- -- --
130.96 0.533 3.71 -- -- 0.976 -- -- -0.0204 -- 25.6 680 -- --
148.54 0.569 3.75 -- -- -- -- -- -0.202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.01 wind 9.0 43200 > th dose dependent rect. 18 6
5 108.26 wind 9.0 43200 > th dose dependent rect. 18 12
7 108.36 temperature 25.0 720 < th dose dependent rect. 23 22
14 108.51 wind 9.0 43200 > th dose dependent rect. 18 4
18 108.54 temperature 25.0 720 < th dose dependent rect. 18 22
23 108.59 temperature 25.0 720 < th dose dependent rect. 14 21
43 108.77 temperature 25.0 720 < th dose dependent rect. 17 18
57 108.85 wind 9.0 43200 > th dose independent rect. 18 7
62 108.88 temperature 25.0 720 < th dose dependent no NA NA
75 109.05 temperature 25.0 720 < th dose dependent rect. 8 23
88 109.23 wind 9.0 43200 < th dose independent rect. 18 7
89 109.23 temperature 25.0 720 < th dose dependent sin 10 NA
93 109.26 wind 9.0 43200 < th dose independent rect. 18 3
94 109.27 wind 9.0 43200 > th dose independent rect. 18 3
104 109.44 temperature 25.0 720 < th dose dependent rect. 4 23
112 109.53 wind 9.0 43200 > th dose independent rect. 18 12
118 109.57 humidity 50.0 14400 > th dose dependent rect. 1 2
137 109.77 wind 7.0 43200 > th dose dependent rect. 18 1
149 109.96 temperature 10.0 720 > th dose dependent sin 9 NA
157 110.06 temperature 10.0 720 > th dose dependent rect. 20 14
202 110.43 radiation 20.0 43200 < th dose independent rect. 1 5
218 110.58 humidity 80.0 14400 > th dose dependent rect. 24 6
219 110.58 temperature 30.0 720 < th dose dependent rect. 23 7
223 110.61 wind 9.0 43200 < th dose independent rect. 18 1
226 110.62 temperature 15.0 720 > th dose dependent rect. 22 10
229 110.64 temperature 25.0 720 < th dose dependent rect. 21 10
240 110.71 wind 7.0 43200 > th dose independent rect. 18 1
311 111.05 radiation 20.0 43200 < th dose independent rect. 4 2
316 111.08 radiation 20.0 43200 < th dose independent rect. 18 12
372 111.42 radiation 1.0 43200 < th dose dependent rect. 7 1
376 111.46 radiation 1.0 43200 < th dose independent rect. 7 1
381 111.47 temperature 25.0 1440 < th dose dependent rect. 17 1
383 111.48 radiation 1.0 43200 > th dose independent rect. 7 1
386 111.48 humidity 80.0 43200 > th dose dependent rect. 9 1
406 111.55 radiation 10.0 4320 < th dose independent rect. 1 5
412 111.57 wind 9.0 43200 > th dose dependent rect. 22 1
422 111.61 humidity 90.0 43200 > th dose independent rect. 9 1
441 111.69 radiation 10.0 4320 < th dose independent rect. 4 2
444 111.70 wind 9.0 43200 < th dose independent rect. 22 1
476 111.77 radiation 10.0 4320 < th dose independent rect. 19 11
489 111.80 wind 7.0 43200 > th dose dependent rect. 24 1
495 111.81 radiation 10.0 4320 < th dose independent rect. 22 8
505 111.83 temperature 25.0 1440 < th dose dependent sin 16 NA
569 111.94 humidity 90.0 43200 < th dose independent rect. 9 1
579 111.95 radiation 20.0 43200 < th dose independent rect. 22 8
601 111.99 wind 7.0 43200 > th dose independent rect. 24 1
607 112.00 wind 7.0 43200 < th dose independent rect. 24 1
636 112.03 temperature 25.0 1440 < th dose dependent rect. 17 6
650 112.06 wind 9.0 43200 > th dose independent rect. 22 1
653 112.06 humidity 90.0 14400 > th dose independent rect. 21 9
669 112.08 humidity 90.0 14400 > th dose dependent sin 9 NA
741 112.16 radiation 30.0 4320 < th dose independent rect. 16 16
757 112.18 wind 7.0 43200 > th dose independent rect. 9 3
767 112.19 wind 7.0 43200 < th dose independent rect. 9 3
768 112.19 temperature 20.0 720 > th dose independent rect. 20 21
804 112.22 wind 7.0 43200 < th dose independent rect. 8 5
811 112.23 wind 7.0 43200 > th dose independent rect. 8 5
869 112.28 precipitation 0.1 43200 < th dose independent rect. 5 1
870 112.28 precipitation 0.1 43200 < th dose dependent rect. 5 1
881 112.29 humidity 90.0 14400 > th dose dependent rect. 5 1
894 112.31 precipitation 0.1 43200 > th dose independent rect. 5 1
906 112.32 humidity 90.0 43200 > th dose independent rect. 7 5
908 112.32 humidity 90.0 43200 < th dose independent rect. 5 7
933 112.34 humidity 90.0 43200 > th dose independent rect. 5 7
934 112.34 wind 9.0 43200 > th dose dependent rect. 5 1
945 112.35 humidity 90.0 14400 < th dose independent rect. 21 9
954 112.36 radiation 30.0 43200 < th dose independent rect. 17 14
955 112.36 temperature 25.0 720 < th dose dependent sin 1 NA
962 112.37 wind 9.0 43200 > th dose dependent sin 14 NA
998 112.41 precipitation 0.1 43200 > th dose dependent rect. 5 1