Os01g0651100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0651100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 223.45 | 0.702 | 4.02 | 1.08 | 1.98 | 1.64 | 1.74 | 2.3 | 0.248 | 20.2 | 35 | 340 | -- | -- |
| 228.11 | 0.703 | 4.02 | 0.98 | 1.97 | 1.52 | 1.78 | -- | 0.251 | 20.1 | 32.83 | 355 | -- | -- |
| 231.93 | 0.709 | 4.02 | 1.03 | 1.94 | 1.6 | -- | 2.06 | 0.25 | 20.1 | 35.67 | 362 | -- | -- |
| 236.3 | 0.716 | 4.02 | 0.982 | 1.96 | 1.55 | -- | -- | 0.238 | 20.1 | 34.67 | 363 | -- | -- |
| 329 | 0.845 | 3.98 | 0.984 | -- | 2.29 | -- | 2.71 | 0.165 | -- | -2.679 | 754 | -- | -- |
| 259.6 | 0.755 | 4 | 1.03 | 2.25 | -- | 1.9 | -- | 0.347 | 19.3 | -- | -- | -- | -- |
| 269.14 | 0.768 | 4 | 0.994 | 2.26 | -- | -- | -- | 0.352 | 19.2 | -- | -- | -- | -- |
| 331.03 | 0.847 | 4 | 0.85 | -- | 2.4 | -- | -- | 0.0824 | -- | -0.6147 | 744 | -- | -- |
| 256.58 | 0.746 | 4.04 | -- | 1.8 | 1.67 | -- | -- | 0.0936 | 20.8 | 10.71 | 400 | -- | -- |
| 538.18 | 1.08 | 3.95 | 0.952 | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
| 295.17 | 0.804 | 4.02 | -- | 2.25 | -- | -- | -- | 0.241 | 19.2 | -- | -- | -- | -- |
| 349.05 | 0.87 | 4.02 | -- | -- | 2.42 | -- | -- | -0.0151 | -- | -10.3 | 744 | -- | -- |
| 562.09 | 1.11 | 3.97 | -- | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 4 |
| 8 | 220.87 | radiation | 40 | 270 | < th | dose independent | rect. | 5 | 22 |
| 9 | 220.92 | radiation | 40 | 270 | < th | dose independent | rect. | 8 | 14 |
| 14 | 221.59 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 5 |
| 19 | 221.94 | radiation | 10 | 270 | > th | dose dependent | rect. | 11 | 21 |
| 20 | 222.07 | radiation | 10 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 77 | 223.03 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 3 |
| 82 | 223.25 | radiation | 40 | 270 | < th | dose independent | rect. | 16 | 23 |
| 83 | 223.29 | radiation | 20 | 270 | > th | dose dependent | sin | 18 | NA |
| 137 | 223.93 | radiation | 40 | 270 | > th | dose independent | sin | 18 | NA |
| 138 | 223.95 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 8 |
| 156 | 224.05 | radiation | 40 | 270 | < th | dose independent | sin | 20 | NA |
| 157 | 224.05 | radiation | 40 | 270 | > th | dose independent | rect. | 11 | 5 |
| 175 | 224.10 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 6 |
| 221 | 224.38 | radiation | 20 | 270 | < th | dose independent | rect. | 6 | 21 |
| 263 | 224.68 | radiation | 20 | 270 | < th | dose independent | rect. | 8 | 15 |
| 318 | 225.30 | radiation | 40 | 270 | < th | dose independent | rect. | 6 | 7 |
| 380 | 225.76 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 381 | 225.81 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 384 | 225.85 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 9 |
| 391 | 225.95 | radiation | 20 | 270 | < th | dose independent | rect. | 7 | 18 |
| 397 | 226.00 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 12 |
| 398 | 226.01 | temperature | 30 | 270 | < th | dose independent | sin | 3 | NA |
| 439 | 226.32 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 15 |
| 465 | 226.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 16 |
| 556 | 227.27 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 592 | 227.43 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 17 |
| 598 | 227.50 | radiation | 40 | 270 | < th | dose dependent | sin | 19 | NA |
| 622 | 227.68 | radiation | 40 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 643 | 227.75 | temperature | 25 | 10 | > th | dose independent | rect. | 13 | 6 |
| 646 | 227.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 11 |
| 650 | 227.78 | radiation | 1 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 716 | 227.87 | temperature | 25 | 90 | > th | dose dependent | sin | 21 | NA |
| 738 | 228.00 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 21 |
| 758 | 228.08 | temperature | 30 | 270 | > th | dose independent | sin | 3 | NA |
| 759 | 228.09 | radiation | 40 | 90 | < th | dose dependent | sin | 15 | NA |
| 820 | 228.41 | radiation | 10 | 270 | > th | dose independent | rect. | 13 | 1 |
| 838 | 228.53 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 891 | 228.64 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 14 |
| 934 | 228.80 | humidity | 70 | 270 | < th | dose independent | rect. | 13 | 1 |
| 937 | 228.81 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 12 |
| 981 | 229.01 | radiation | 40 | 270 | > th | dose independent | no | NA | NA |