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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0651000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.0168) R2 : 0.365
β1 : -0.107 (0.0621) R2dD : 0.00436 R2D : -0.00808
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.36 (0.123) R2dE : 0.179 R2E : 0.0941
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.1 (0.889) R2dD*E : 0.275 R2D*E : 0.181
γ1 : -0.0247 (0.0359) R2dN8 : 0.000887 R2N8 : 0.00213
σ : 0.315
deviance : 45.32
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.64
memory length : 31
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 7.08
open length of G : 1.06

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.88 0.315 3.02 -0.105 0.083 1.32 -0.193 -12 -0.0276 6.67 24.88 30 7.07 1.04
62.87 0.372 3.02 0.0228 0.0816 1 -0.491 -- -0.0351 6.26 24.47 39 7.1 1.26
44.93 0.315 3.02 -0.108 0.0854 1.32 -- -12.1 -0.0267 7.79 24.88 30 7.07 1.04
63.4 0.373 3.02 0.0182 0.0859 0.992 -- -- -0.0331 7.75 24.47 39 7.1 1.26
45.32 0.315 3.02 -0.107 -- 1.36 -- -12.1 -0.0247 -- 24.64 31 7.08 1.06
69.56 0.391 3.02 0.024 0.146 -- -0.427 -- -0.0552 6.83 -- -- -- --
69.95 0.392 3.02 0.0179 0.147 -- -- -- -0.0534 7.71 -- -- -- --
63.74 0.372 3.02 0.0212 -- 1.03 -- -- -0.0398 -- 24.95 33 6.98 1.1
63.41 0.373 3.02 -- 0.086 0.992 -- -- -0.0352 7.73 24.52 37 7.11 1.25
71.12 0.394 3.02 0.0198 -- -- -- -- -0.0513 -- -- -- -- --
69.96 0.391 3.02 -- 0.147 -- -- -- -0.0554 7.7 -- -- -- --
63.75 0.372 3.02 -- -- 1.03 -- -- -0.0426 -- 25.01 33 6.99 1.11
71.13 0.394 3.02 -- -- -- -- -- -0.0535 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 45.03 temperature 25.0 30 > th dose independent rect. 7 1
3 54.40 temperature 25.0 10 > th dose dependent rect. 7 1
4 55.18 humidity 80.0 10 < th dose independent rect. 7 1
14 56.40 radiation 10.0 30 > th dose independent rect. 7 1
48 60.86 wind 3.0 10 < th dose dependent rect. 7 1
49 61.24 wind 7.0 4320 > th dose independent rect. 1 1
54 61.24 wind 7.0 4320 > th dose dependent rect. 1 1
73 62.23 atmosphere 1005.0 30 > th dose independent rect. 7 1
78 62.67 radiation 20.0 10 < th dose independent rect. 7 1
81 62.83 wind 1.0 720 < th dose dependent rect. 22 1
92 63.08 wind 3.0 10 < th dose independent rect. 7 1
97 63.31 wind 9.0 4320 > th dose independent rect. 19 1
98 63.31 wind 9.0 4320 > th dose dependent rect. 19 1
99 63.49 wind 1.0 720 < th dose independent rect. 22 1
130 64.15 wind 3.0 10 > th dose dependent rect. 8 1
147 64.33 radiation 10.0 10 > th dose independent sin 11 NA
178 64.73 wind 1.0 720 < th dose dependent rect. 2 1
181 64.77 humidity 80.0 10 < th dose independent rect. 20 12
202 65.16 humidity 70.0 30 > th dose independent rect. 7 1
227 65.47 wind 1.0 30 > th dose independent rect. 7 1
238 65.53 humidity 90.0 10 < th dose dependent rect. 7 1
246 65.61 atmosphere 995.0 30 > th dose independent rect. 8 23
249 65.63 temperature 25.0 30 > th dose independent rect. 20 12
267 65.78 precipitation 0.1 1440 < th dose independent rect. 8 1
268 65.78 precipitation 0.1 1440 < th dose dependent rect. 8 1
271 65.79 wind 9.0 1440 < th dose independent rect. 8 1
274 65.79 temperature 10.0 30 > th dose independent rect. 7 1
276 65.79 temperature 10.0 1440 > th dose independent rect. 8 1
281 65.79 temperature 30.0 30 < th dose independent rect. 7 1
282 65.79 humidity 50.0 30 > th dose independent rect. 7 1
284 65.79 humidity 50.0 1440 > th dose independent rect. 8 1
286 65.79 atmosphere 995.0 30 > th dose independent rect. 7 1
287 65.79 atmosphere 995.0 1440 > th dose independent rect. 8 1
290 65.79 atmosphere 1010.0 30 < th dose independent rect. 7 1
292 65.79 atmosphere 1015.0 1440 < th dose independent rect. 8 1
293 65.79 precipitation 0.1 30 < th dose independent rect. 7 1
296 65.79 temperature 10.0 30 > th dose independent rect. 8 23
297 65.79 temperature 10.0 1440 > th dose independent rect. 9 23
300 65.79 precipitation 0.1 30 < th dose dependent rect. 7 1
304 65.81 temperature 25.0 30 > th dose independent rect. 22 10
306 65.83 wind 1.0 720 < th dose independent rect. 2 1
320 65.85 precipitation 0.1 30 < th dose independent rect. 8 23
321 65.85 wind 9.0 1440 > th dose dependent rect. 9 1
330 65.85 precipitation 0.1 30 < th dose dependent rect. 8 23
333 65.88 wind 1.0 720 > th dose independent rect. 18 9
340 65.90 wind 1.0 720 > th dose independent rect. 14 14
341 65.90 wind 1.0 720 > th dose independent rect. 8 19
342 65.90 wind 9.0 30 < th dose independent rect. 8 23
346 65.94 atmosphere 995.0 30 > th dose dependent rect. 7 1
359 66.02 radiation 40.0 30 < th dose dependent rect. 7 1
377 66.10 wind 7.0 4320 < th dose independent rect. 1 1
383 66.12 temperature 25.0 10 > th dose dependent rect. 4 4
386 66.13 wind 1.0 1440 > th dose independent rect. 22 1
394 66.14 atmosphere 1015.0 30 < th dose dependent rect. 7 1
414 66.23 temperature 20.0 90 > th dose dependent rect. 4 4
433 66.28 temperature 25.0 10 > th dose dependent rect. 22 10
442 66.31 wind 1.0 720 > th dose independent rect. 22 5
443 66.31 humidity 50.0 30 > th dose independent rect. 8 23
454 66.35 wind 1.0 720 < th dose independent rect. 20 7
459 66.37 wind 9.0 1440 > th dose independent rect. 9 1
467 66.39 wind 1.0 720 > th dose independent sin 17 NA
479 66.42 wind 1.0 720 < th dose dependent rect. 22 6
480 66.42 wind 1.0 720 < th dose dependent rect. 19 9
505 66.48 wind 1.0 720 < th dose dependent rect. 11 17
521 66.53 wind 1.0 720 < th dose independent rect. 11 16
547 66.59 humidity 90.0 30 < th dose dependent rect. 3 5
551 66.61 wind 9.0 4320 < th dose independent rect. 24 8
606 66.76 wind 1.0 720 < th dose independent sin 17 NA
630 66.81 wind 1.0 720 < th dose dependent sin 17 NA
660 66.86 wind 1.0 720 > th dose independent rect. 11 16
701 66.92 temperature 30.0 30 < th dose independent rect. 8 23
720 66.95 radiation 1.0 90 > th dose independent rect. 8 22
785 67.02 atmosphere 1000.0 270 < th dose dependent rect. 16 1
793 67.03 atmosphere 1015.0 30 < th dose independent rect. 8 23
801 67.04 wind 7.0 4320 > th dose independent rect. 24 9
804 67.04 temperature 20.0 90 < th dose dependent rect. 2 1
821 67.06 atmosphere 1000.0 270 < th dose independent rect. 16 3
826 67.06 temperature 25.0 30 > th dose independent rect. 16 16
863 67.09 wind 9.0 4320 > th dose dependent rect. 22 1
869 67.10 wind 7.0 4320 > th dose independent rect. 4 1
875 67.10 wind 5.0 4320 > th dose dependent rect. 4 1
900 67.12 wind 7.0 720 < th dose dependent rect. 20 1
906 67.13 wind 7.0 4320 < th dose independent rect. 4 1
915 67.14 wind 9.0 4320 > th dose independent rect. 21 1