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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0649200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.89 (0.0513) R2 : 0.225
β1 : 0.157 (0.179) R2dD : 0.00271 R2D : -0.0123
β2 : 0.732 (0.115) R2dC : 0.0663 R2C : 0.0511
β3 : -1.56 (0.462) R2dE : 0.137 R2E : -0.296
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.62 (1.41) R2dD*E : 0.447 R2D*E : 0.0113
γ1 : -0.233 (0.0976) R2dN8 : 0.0103 R2N8 : -0.0138
σ : 0.826
deviance : 314.72
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_____
C
peak time of C : 5.42
E
wheather : radiation
threshold : 40.08
memory length : 6817
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15
open length of G : 1.82

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
316.47 0.836 4.91 0.136 0.724 -1.53 0.435 -8.74 -0.232 5.01 40.08 6655 15 1.48
357.24 0.88 5.04 0.413 0.482 0.739 -0.129 -- -0.278 5.8 36.92 15987 15 1.71
314.72 0.826 4.89 0.157 0.732 -1.56 -- -8.62 -0.233 5.42 40.08 6817 15 1.82
348.37 0.869 5.04 0.542 0.726 0.957 -- -- -0.251 5.46 34.84 16014 15.1 1.63
339.97 0.859 4.88 0.189 -- -2.06 -- -10.3 -0.196 -- 40.11 6863 15 2.16
370.7 0.903 5.07 0.115 0.709 -- 0.252 -- -0.325 5.31 -- -- -- --
370.82 0.902 5.07 0.116 0.712 -- -- -- -0.326 5.43 -- -- -- --
371.44 0.898 5.07 0.801 -- 1.15 -- -- -0.246 -- 34.84 15503 15.1 1.74
359.61 0.883 5.05 -- 0.752 0.842 -- -- -0.249 5.46 34.93 15467 15.1 2.97
397.21 0.931 5.08 0.14 -- -- -- -- -0.309 -- -- -- -- --
371.17 0.901 5.07 -- 0.714 -- -- -- -0.339 5.42 -- -- -- --
382.62 0.911 5.08 -- -- 0.774 -- -- -0.266 -- 33.04 15485 15.1 2.18
397.72 0.931 5.08 -- -- -- -- -- -0.324 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 299.10 precipitation 0.1 14400 > th dose dependent rect. 4 1
3 299.28 precipitation 0.1 14400 > th dose independent rect. 4 1
4 299.34 precipitation 0.1 14400 < th dose independent rect. 4 1
5 299.34 precipitation 0.1 14400 < th dose dependent rect. 4 1
42 320.06 humidity 60.0 14400 > th dose independent rect. 15 2
44 320.48 humidity 60.0 14400 < th dose dependent rect. 14 1
46 321.66 humidity 70.0 14400 < th dose dependent rect. 16 1
47 321.84 radiation 40.0 4320 > th dose independent rect. 15 1
64 321.99 humidity 60.0 14400 < th dose dependent rect. 14 3
66 322.05 humidity 50.0 14400 > th dose dependent rect. 7 2
74 322.78 humidity 60.0 14400 > th dose independent rect. 15 18
80 323.06 humidity 70.0 14400 < th dose dependent rect. 14 19
83 323.26 humidity 90.0 14400 < th dose dependent rect. 7 2
88 323.37 humidity 60.0 14400 > th dose independent rect. 15 10
90 323.37 humidity 60.0 14400 > th dose independent rect. 15 14
94 323.39 humidity 60.0 14400 > th dose independent rect. 15 7
106 323.81 humidity 60.0 14400 < th dose independent rect. 15 2
128 324.11 humidity 70.0 14400 < th dose dependent rect. 14 8
162 324.47 humidity 70.0 14400 < th dose independent rect. 15 18
194 324.94 humidity 70.0 14400 < th dose dependent sin 14 NA
212 325.06 wind 3.0 14400 < th dose dependent rect. 1 1
216 325.13 humidity 70.0 14400 > th dose independent rect. 19 14
219 325.17 humidity 60.0 14400 < th dose independent rect. 14 8
228 325.18 humidity 60.0 14400 > th dose independent sin 13 NA
262 325.32 humidity 70.0 14400 < th dose independent rect. 18 15
395 326.16 humidity 80.0 14400 < th dose dependent rect. 20 22
396 326.17 humidity 80.0 14400 < th dose dependent rect. 6 17
476 326.44 wind 7.0 43200 > th dose dependent rect. 12 1
493 326.47 humidity 60.0 14400 < th dose independent sin 14 NA
499 326.50 radiation 30.0 14400 < th dose independent rect. 17 7
515 326.55 humidity 70.0 14400 < th dose independent sin 12 NA
545 326.67 humidity 80.0 14400 < th dose dependent no NA NA
550 326.70 humidity 80.0 14400 < th dose dependent rect. 6 12
955 327.76 humidity 60.0 14400 < th dose independent rect. 19 22