Os01g0647800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0647800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.32 | 0.295 | 9.39 | -0.87 | 0.419 | -0.779 | -0.877 | -0.32 | -0.082 | 15.5 | 25.63 | 114 | -- | -- |
| 39.48 | 0.293 | 9.4 | -0.905 | 0.425 | -0.749 | -0.81 | -- | -0.0951 | 15.5 | 25.7 | 125 | -- | -- |
| 40.97 | 0.298 | 9.41 | -0.97 | 0.441 | -0.745 | -- | 0.228 | -0.105 | 16 | 25.35 | 109 | -- | -- |
| 41.07 | 0.298 | 9.41 | -0.95 | 0.431 | -0.769 | -- | -- | -0.106 | 16 | 25.34 | 109 | -- | -- |
| 47.11 | 0.32 | 9.41 | -1.12 | -- | -1.07 | -- | 0.33 | -0.173 | -- | 29.6 | 104 | -- | -- |
| 47.65 | 0.324 | 9.37 | -0.735 | 0.575 | -- | -0.76 | -- | 0.0651 | 15.4 | -- | -- | -- | -- |
| 49.41 | 0.329 | 9.37 | -0.749 | 0.576 | -- | -- | -- | 0.0608 | 15.6 | -- | -- | -- | -- |
| 47.27 | 0.32 | 9.41 | -1.02 | -- | -1.06 | -- | -- | -0.158 | -- | 29.4 | 104 | -- | -- |
| 61.78 | 0.366 | 9.37 | -- | 0.523 | -0.401 | -- | -- | 0.0717 | 15.9 | 25.25 | 45 | -- | -- |
| 67.83 | 0.385 | 9.37 | -0.773 | -- | -- | -- | -- | 0.0455 | -- | -- | -- | -- | -- |
| 64.19 | 0.375 | 9.35 | -- | 0.59 | -- | -- | -- | 0.144 | 15.6 | -- | -- | -- | -- |
| 72.24 | 0.397 | 9.38 | -- | -- | -0.719 | -- | -- | 0.0131 | -- | 29.7 | 23 | -- | -- |
| 83.59 | 0.427 | 9.35 | -- | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 2 | 35.87 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 21 |
| 3 | 36.06 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 4 | 36.08 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 20 |
| 10 | 36.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 47 | 37.23 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 55 | 37.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 102 | 37.78 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 8 |
| 115 | 37.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 127 | 37.97 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 20 |
| 128 | 37.97 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 143 | 38.12 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 9 |
| 150 | 38.21 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 166 | 38.29 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 19 |
| 238 | 38.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 257 | 38.73 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 272 | 38.78 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 282 | 38.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 294 | 38.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 10 | 21 |
| 306 | 38.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 9 |
| 368 | 39.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 396 | 39.23 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 399 | 39.24 | temperature | 15 | 90 | > th | dose independent | rect. | 7 | 8 |
| 425 | 39.29 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 428 | 39.29 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 16 |
| 440 | 39.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 454 | 39.37 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 15 |
| 471 | 39.42 | humidity | 90 | 270 | < th | dose independent | rect. | 6 | 7 |
| 476 | 39.42 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 495 | 39.46 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 502 | 39.48 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 570 | 39.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 587 | 39.66 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 641 | 39.79 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 646 | 39.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 649 | 39.80 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 666 | 39.84 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 8 |
| 668 | 39.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 669 | 39.84 | radiation | 20 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 685 | 39.86 | humidity | 90 | 10 | < th | dose independent | rect. | 7 | 9 |
| 743 | 39.94 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 7 |
| 800 | 40.03 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 846 | 40.09 | atmosphere | 1015 | 270 | < th | dose independent | rect. | 6 | 20 |