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Os01g0647200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.138) R2 : 0.562
β1 : -4.46 (0.503) R2dD : 0.116 R2D : -0.0318
β2 : 1.19 (0.299) R2dC : 0.0161 R2C : -0.222
β3 : -8.6 (0.747) R2dE : 0.28 R2E : -0.126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -23.4 (2.22) R2dD*E : 0.206 R2D*E : -0.233
γ1 : -4.31 (0.262) R2dN8 : 0.398 R2N8 : -0.00627
σ : 2.15
deviance : 2127.1
__
_____
C
peak time of C : 19.1
E
wheather : radiation
threshold : 39.9
memory length : 5772
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 14
open length of G : 4.97

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
2137.74 2.17 10.7 -4.5 1.13 -8.57 0.407 -23.4 -4.31 19.4 40 5768 14 5
2592.6 2.37 10.3 -4.62 1.06 -7.17 0.352 -- -5.1 19.2 40.43 5769 14.1 5.74
2127.1 2.15 10.7 -4.46 1.19 -8.6 -- -23.4 -4.31 19.1 39.9 5772 14 4.97
2364.83 2.26 10.2 -6.87 1.18 -4.82 -- -- -4.5 19 40.38 5766 14.1 5.8
2196.73 2.18 10.7 -4.44 -- -8.55 -- -23.4 -4.4 -- 39.82 5767 14 4.97
2888.91 2.52 9.86 -7.43 0.893 -- 0.987 -- -3.19 20.8 -- -- -- --
2891.04 2.52 9.86 -7.45 0.915 -- -- -- -3.19 20.2 -- -- -- --
2414.43 2.29 10.1 -6.81 -- -4.55 -- -- -4.6 -- 40.38 5751 14.1 5.69
3561.81 2.78 10.3 -- 1 -4.63 -- -- -4.32 18.9 13.88 8785 14 5.98
2937.13 2.53 9.84 -7.46 -- -- -- -- -3.2 -- -- -- -- --
4355.06 3.09 9.68 -- 0.966 -- -- -- -2.36 19.6 -- -- -- --
2692.94 2.42 9.68 -- -- -6.1 -- -- -2.94 -- 6.183 30161 14 7.15
4405.22 3.1 9.65 -- -- -- -- -- -2.37 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 2022.49 humidity 80.0 14400 < th dose independent rect. 18 12
4 2029.03 humidity 80.0 14400 > th dose independent rect. 17 14
5 2029.20 humidity 80.0 14400 > th dose independent rect. 18 12
21 2059.94 humidity 80.0 14400 < th dose independent sin 12 NA
24 2065.04 humidity 80.0 14400 > th dose independent sin 12 NA
25 2065.89 humidity 80.0 14400 < th dose dependent rect. 18 13
65 2095.50 radiation 40.0 14400 > th dose dependent rect. 12 1
200 2156.73 radiation 40.0 14400 < th dose independent rect. 13 1
220 2157.49 precipitation 0.1 43200 > th dose dependent rect. 17 20
222 2157.65 radiation 40.0 14400 > th dose dependent sin 15 NA
225 2158.78 precipitation 0.1 43200 > th dose dependent rect. 17 11
226 2158.95 precipitation 0.1 43200 > th dose dependent sin 13 NA
227 2158.99 precipitation 0.1 43200 > th dose dependent rect. 10 18
229 2159.04 precipitation 0.1 43200 > th dose dependent rect. 17 22
237 2160.05 precipitation 0.1 43200 > th dose dependent rect. 7 21
240 2160.12 precipitation 0.1 43200 > th dose dependent rect. 14 23
241 2160.16 precipitation 0.1 43200 > th dose dependent rect. 20 23
251 2161.01 precipitation 0.1 43200 > th dose dependent rect. 14 14
258 2161.57 precipitation 0.1 43200 > th dose dependent rect. 10 22
283 2162.50 precipitation 0.1 43200 > th dose dependent rect. 24 23
290 2163.34 precipitation 0.1 43200 > th dose dependent no NA NA
296 2163.45 precipitation 0.1 43200 > th dose dependent rect. 2 23
297 2163.58 radiation 40.0 14400 < th dose independent rect. 12 20
303 2163.83 precipitation 0.1 43200 < th dose independent rect. 17 11
304 2163.83 precipitation 0.1 43200 < th dose dependent rect. 17 11
307 2164.02 radiation 40.0 14400 < th dose independent rect. 12 7
308 2164.03 precipitation 0.1 43200 > th dose independent rect. 17 11
316 2164.25 radiation 40.0 14400 < th dose independent rect. 12 11
321 2164.29 radiation 40.0 14400 < th dose independent rect. 12 17
336 2164.90 radiation 40.0 14400 > th dose independent rect. 12 2
356 2165.90 precipitation 0.1 43200 < th dose independent rect. 17 8
357 2165.90 precipitation 0.1 43200 < th dose dependent rect. 17 8
362 2166.10 precipitation 0.1 43200 > th dose dependent rect. 24 19
371 2166.54 precipitation 0.1 43200 > th dose independent rect. 17 8
402 2167.98 precipitation 0.1 43200 > th dose dependent rect. 18 7
488 2171.09 precipitation 0.1 43200 < th dose independent sin 16 NA
489 2171.09 precipitation 0.1 43200 < th dose dependent sin 16 NA
491 2171.16 precipitation 0.1 43200 > th dose independent sin 16 NA
511 2171.94 humidity 90.0 43200 > th dose independent rect. 21 1
520 2172.52 radiation 10.0 14400 < th dose independent rect. 6 1
551 2173.90 precipitation 0.1 43200 < th dose independent rect. 16 20
552 2173.90 precipitation 0.1 43200 < th dose dependent rect. 16 20
557 2174.12 precipitation 0.1 43200 > th dose independent rect. 16 20
561 2174.35 radiation 20.0 14400 < th dose dependent rect. 2 5
625 2175.33 radiation 40.0 14400 < th dose dependent rect. 2 5
627 2175.35 radiation 20.0 14400 < th dose dependent rect. 22 9
645 2175.79 precipitation 0.1 43200 > th dose independent rect. 2 20
651 2175.87 radiation 1.0 14400 > th dose dependent rect. 18 13
669 2176.03 precipitation 0.1 43200 < th dose independent rect. 3 20
670 2176.03 precipitation 0.1 43200 < th dose dependent rect. 3 20
734 2177.07 precipitation 0.1 43200 > th dose dependent sin 1 NA
737 2177.21 radiation 40.0 14400 < th dose dependent rect. 22 9
738 2177.22 precipitation 0.1 43200 < th dose independent rect. 18 4
739 2177.22 precipitation 0.1 43200 > th dose independent rect. 11 14
740 2177.22 precipitation 0.1 43200 < th dose dependent rect. 18 4
743 2177.27 precipitation 0.1 43200 < th dose independent rect. 11 14
744 2177.27 precipitation 0.1 43200 < th dose dependent rect. 11 14
779 2177.86 precipitation 0.1 43200 > th dose independent rect. 11 17
782 2177.92 radiation 1.0 14400 > th dose dependent rect. 4 3
797 2178.01 precipitation 0.1 43200 < th dose independent rect. 11 17
798 2178.01 precipitation 0.1 43200 < th dose dependent rect. 11 17
830 2178.33 precipitation 0.1 43200 > th dose independent rect. 18 4
836 2178.54 humidity 90.0 14400 < th dose dependent sin 11 NA
843 2178.66 precipitation 0.1 43200 > th dose independent rect. 11 21
862 2178.94 precipitation 0.1 43200 < th dose independent rect. 11 21
863 2178.94 precipitation 0.1 43200 < th dose dependent rect. 11 21
894 2179.44 wind 1.0 43200 > th dose independent rect. 10 1
960 2179.94 humidity 50.0 14400 > th dose dependent rect. 19 12