Os01g0646400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os01g0646400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.34 | 0.316 | 8.83 | 0.798 | 0.176 | -2.72 | 3.74 | -4.03 | -0.0529 | 4.6 | 0.9397 | 737 | -- | -- |
| 47.28 | 0.32 | 8.87 | 0.622 | 0.0012 | -2.58 | -1.26 | -- | -0.123 | 13.9 | 0.5928 | 758 | -- | -- |
| 52.27 | 0.337 | 8.87 | 0.643 | 0.39 | -2.37 | -- | -0.26 | -0.0842 | 15.8 | 0.5605 | 812 | -- | -- |
| 52.01 | 0.336 | 8.87 | 0.652 | 0.381 | -2.22 | -- | -- | -0.0837 | 16.9 | 0.4821 | 789 | -- | -- |
| 52.98 | 0.339 | 8.87 | 0.61 | -- | -2.57 | -- | 0.197 | -0.0711 | -- | 0.4598 | 759 | -- | -- |
| 59.57 | 0.362 | 8.89 | 0.852 | 2 | -- | -0.148 | -- | -0.00888 | 18 | -- | -- | -- | -- |
| 59.62 | 0.362 | 8.89 | 0.853 | 2 | -- | -- | -- | -0.00954 | 18 | -- | -- | -- | -- |
| 52.89 | 0.339 | 8.87 | 0.607 | -- | -2.58 | -- | -- | -0.0999 | -- | 0.54 | 763 | -- | -- |
| 61.6 | 0.366 | 8.86 | -- | 0.174 | -2.6 | -- | -- | -0.135 | 14.7 | 0.07949 | 793 | -- | -- |
| 266.56 | 0.763 | 8.86 | 0.794 | -- | -- | -- | -- | -0.0553 | -- | -- | -- | -- | -- |
| 78.79 | 0.415 | 8.91 | -- | 1.99 | -- | -- | -- | -0.105 | 18 | -- | -- | -- | -- |
| 61.83 | 0.366 | 8.88 | -- | -- | -2.66 | -- | -- | -0.164 | -- | 0.17 | 771 | -- | -- |
| 283.17 | 0.785 | 8.88 | -- | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.86 | radiation | 1.0 | 720 | < th | dose dependent | sin | 14 | NA |
| 2 | 44.25 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 14 |
| 5 | 44.52 | temperature | 30.0 | 720 | < th | dose independent | rect. | 17 | 6 |
| 6 | 44.57 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 16 | 7 |
| 7 | 44.62 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 7 |
| 8 | 44.62 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 9 | 44.64 | radiation | 1.0 | 720 | > th | dose independent | sin | 15 | NA |
| 11 | 44.74 | radiation | 1.0 | 720 | > th | dose independent | rect. | 7 | 12 |
| 22 | 44.77 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 4 |
| 35 | 44.82 | radiation | 1.0 | 720 | < th | dose independent | sin | 14 | NA |
| 53 | 45.00 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 57 | 45.04 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 90 | 45.40 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 125 | 45.66 | radiation | 1.0 | 720 | < th | dose independent | rect. | 15 | 15 |
| 134 | 45.71 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 137 | 45.73 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 140 | 45.78 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 173 | 45.97 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 6 |
| 187 | 46.14 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 19 |
| 188 | 46.15 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 192 | 46.17 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 209 | 46.22 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 19 |
| 217 | 46.27 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 15 | 4 |
| 225 | 46.33 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 16 | 2 |
| 226 | 46.34 | humidity | 70.0 | 720 | > th | dose independent | sin | 12 | NA |
| 274 | 46.59 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 11 |
| 289 | 46.64 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 354 | 46.84 | radiation | 1.0 | 720 | < th | dose independent | rect. | 19 | 23 |
| 357 | 46.85 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 19 |
| 403 | 47.01 | humidity | 50.0 | 720 | > th | dose independent | rect. | 11 | 19 |
| 408 | 47.02 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 418 | 47.05 | temperature | 30.0 | 720 | < th | dose independent | sin | 13 | NA |
| 433 | 47.13 | radiation | 10.0 | 720 | < th | dose independent | rect. | 5 | 6 |
| 477 | 47.27 | radiation | 1.0 | 720 | < th | dose independent | rect. | 16 | 23 |
| 523 | 47.40 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 584 | 47.44 | humidity | 50.0 | 720 | > th | dose independent | rect. | 12 | 10 |
| 585 | 47.44 | humidity | 50.0 | 720 | > th | dose independent | rect. | 10 | 14 |
| 587 | 47.44 | radiation | 1.0 | 720 | < th | dose independent | rect. | 13 | 23 |
| 605 | 47.47 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 5 |
| 609 | 47.48 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 23 |
| 617 | 47.50 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 619 | 47.50 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 15 |
| 635 | 47.53 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 661 | 47.59 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 674 | 47.62 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 700 | 47.69 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 8 |
| 731 | 47.75 | humidity | 60.0 | 720 | > th | dose independent | rect. | 17 | 20 |
| 750 | 47.80 | radiation | 1.0 | 720 | < th | dose dependent | sin | 1 | NA |
| 751 | 47.80 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 769 | 47.84 | radiation | 10.0 | 720 | < th | dose independent | rect. | 19 | 16 |
| 772 | 47.85 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 7 | 12 |
| 818 | 47.94 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 21 |
| 827 | 47.96 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 834 | 47.97 | humidity | 90.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 847 | 47.99 | radiation | 10.0 | 720 | < th | dose independent | rect. | 21 | 14 |
| 854 | 48.01 | humidity | 80.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 855 | 48.01 | temperature | 25.0 | 90 | < th | dose independent | rect. | 12 | 21 |
| 857 | 48.02 | humidity | 80.0 | 720 | < th | dose independent | rect. | 14 | 6 |
| 867 | 48.04 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 13 | 15 |
| 874 | 48.04 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 13 | 15 |
| 883 | 48.06 | radiation | 10.0 | 720 | < th | dose independent | rect. | 22 | 20 |
| 922 | 48.11 | radiation | 10.0 | 720 | < th | dose independent | sin | 3 | NA |
| 944 | 48.15 | humidity | 50.0 | 720 | > th | dose independent | sin | 10 | NA |
| 972 | 48.17 | radiation | 20.0 | 720 | < th | dose independent | rect. | 16 | 16 |
| 975 | 48.18 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 16 | 9 |
| 979 | 48.18 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 16 | 9 |