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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0646000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.88 (0.041) R2 : 0.717
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.37 (0.144) R2dC : 0.103 R2C : 0.359
β3 : -2.64 (0.149) R2dE : 0.358 R2E : 0.613
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0503 (0.0865) R2dN8 : 0.000282 R2N8 : -0.000626
σ : 0.769
deviance : 272.94
__
_____
C
peak time of C : 19.1
E
wheather : humidity
threshold : 48.32
memory length : 241
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.4
open length of G : 18.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
257.61 0.754 3.88 0.584 1.36 -2.79 2.02 0.922 -0.00787 19.2 49 258 17.1 18.8
258.26 0.748 3.87 0.596 1.33 -2.77 1.49 -- 0.00121 19.3 49.19 253 17.2 18.7
267.84 0.762 3.87 0.613 1.4 -2.69 -- 0.79 -0.0104 19 49.03 252 17.2 18.8
264.47 0.757 3.87 0.578 1.33 -2.76 -- -- -0.00463 19.2 49.03 254 17.3 18.7
300.05 0.807 3.85 0.388 -- -2.99 -- 1.25 -0.0292 -- 50 177 19.4 17
400.18 0.938 3.88 0.701 3.25 -- 1.18 -- 0.136 18.1 -- -- -- --
403.57 0.941 3.88 0.69 3.26 -- -- -- 0.141 18 -- -- -- --
284.84 0.786 3.85 0.519 -- -3.13 -- -- -0.0705 -- 51 216 19.3 16.6
272.94 0.769 3.88 -- 1.37 -2.64 -- -- -0.0503 19.1 48.32 241 17.4 18.6
953.51 1.44 3.82 0.596 -- -- -- -- 0.0675 -- -- -- -- --
416.12 0.954 3.89 -- 3.25 -- -- -- 0.0643 18.1 -- -- -- --
291.64 0.795 3.87 -- -- -3.14 -- -- -0.137 -- 50 207 19.3 16.6
962.88 1.45 3.83 -- -- -- -- -- 0.00136 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 258.46 humidity 50.0 270 > th dose independent rect. 17 19
2 260.30 humidity 50.0 90 > th dose independent rect. 19 18
3 260.56 humidity 90.0 270 < th dose independent rect. 12 5
4 261.30 atmosphere 995.0 270 > th dose independent rect. 17 19
5 261.42 temperature 10.0 90 > th dose independent rect. 13 6
7 261.42 atmosphere 1010.0 90 < th dose independent rect. 13 6
9 261.42 temperature 10.0 90 > th dose independent rect. 19 18
10 261.42 atmosphere 995.0 90 > th dose independent rect. 19 18
14 261.44 temperature 10.0 270 > th dose independent rect. 17 19
15 261.49 precipitation 0.1 270 < th dose independent rect. 12 5
16 261.49 precipitation 0.1 270 < th dose dependent rect. 12 5
17 261.68 precipitation 0.1 270 < th dose independent rect. 17 19
18 261.68 precipitation 0.1 270 < th dose dependent rect. 17 19
23 262.17 precipitation 0.1 90 < th dose independent rect. 19 18
24 262.17 precipitation 0.1 90 < th dose dependent rect. 19 18
25 262.91 wind 9.0 270 < th dose independent rect. 22 9
26 262.93 wind 9.0 270 < th dose independent rect. 12 5
27 263.05 temperature 10.0 270 > th dose independent rect. 22 9
28 263.05 temperature 30.0 270 < th dose independent rect. 22 9
29 263.05 humidity 50.0 270 > th dose independent rect. 22 9
31 263.05 atmosphere 995.0 270 > th dose independent rect. 22 9
32 263.05 radiation 30.0 270 < th dose independent rect. 22 9
34 263.05 temperature 10.0 270 > th dose independent rect. 7 15
36 263.21 wind 9.0 270 < th dose independent rect. 17 19
39 263.53 temperature 15.0 270 > th dose independent rect. 11 7
44 264.28 wind 1.0 270 > th dose independent rect. 7 4
47 264.59 humidity 50.0 270 > th dose independent rect. 7 4
48 264.63 precipitation 0.1 270 < th dose independent rect. 11 7
49 264.63 wind 9.0 90 < th dose independent rect. 19 18
50 264.63 precipitation 0.1 270 < th dose dependent rect. 11 7
52 264.65 atmosphere 1015.0 270 < th dose independent rect. 11 7
54 265.21 wind 1.0 90 > th dose independent rect. 13 6
68 265.72 radiation 1.0 270 > th dose independent rect. 12 6
69 265.83 wind 9.0 270 < th dose independent rect. 11 7
71 265.90 radiation 40.0 270 < th dose dependent rect. 22 9
74 266.41 humidity 50.0 270 > th dose independent rect. 6 6
76 266.59 temperature 10.0 270 > th dose independent rect. 7 4
77 266.59 atmosphere 995.0 270 > th dose independent rect. 7 4
78 266.59 atmosphere 1015.0 270 < th dose independent rect. 7 4
79 266.59 temperature 10.0 270 > th dose independent rect. 11 20
80 266.62 wind 9.0 270 < th dose independent rect. 7 15
81 266.68 radiation 1.0 270 > th dose independent rect. 4 8
92 266.79 precipitation 0.1 270 < th dose independent rect. 7 4
93 266.79 precipitation 0.1 270 < th dose dependent rect. 7 4
95 267.09 wind 9.0 270 < th dose independent rect. 7 4
97 267.41 wind 9.0 270 < th dose independent rect. 11 20
101 267.43 precipitation 0.1 270 < th dose independent rect. 22 9
109 267.43 precipitation 0.1 270 < th dose dependent rect. 22 9
110 267.47 precipitation 0.1 270 < th dose independent rect. 7 15
111 267.47 precipitation 0.1 270 < th dose dependent rect. 7 15
122 269.12 temperature 10.0 270 > th dose independent rect. 6 6
123 269.12 atmosphere 995.0 270 > th dose independent rect. 6 6
124 269.12 atmosphere 1015.0 270 < th dose independent rect. 6 6
125 269.12 temperature 10.0 270 > th dose independent rect. 12 18
127 269.28 precipitation 0.1 270 < th dose independent rect. 6 6
128 269.28 precipitation 0.1 270 < th dose dependent rect. 6 6
129 269.29 atmosphere 1015.0 90 < th dose dependent rect. 13 6
130 269.33 temperature 30.0 270 < th dose independent rect. 18 17
131 269.34 atmosphere 995.0 270 > th dose independent rect. 12 5
135 269.53 temperature 15.0 10 > th dose independent rect. 20 17
136 269.54 wind 1.0 270 > th dose independent rect. 7 15
139 269.78 wind 1.0 270 > th dose independent rect. 6 6
140 269.82 temperature 10.0 1440 > th dose independent rect. 14 6
143 269.82 temperature 10.0 1440 > th dose independent rect. 20 18
146 269.82 atmosphere 995.0 1440 > th dose independent rect. 20 18
147 269.97 radiation 1.0 270 > th dose independent rect. 7 4
150 270.18 wind 9.0 270 < th dose independent rect. 12 18
151 270.27 wind 9.0 270 < th dose independent rect. 6 6
159 270.31 temperature 10.0 90 > th dose dependent rect. 13 6
160 270.49 precipitation 0.1 270 < th dose independent rect. 11 20
161 270.49 precipitation 0.1 270 < th dose dependent rect. 11 20
168 270.90 radiation 1.0 270 > th dose independent rect. 11 19
175 271.45 atmosphere 1015.0 270 < th dose independent rect. 7 15
197 271.97 temperature 30.0 270 < th dose independent rect. 7 4
202 272.25 precipitation 0.1 10 < th dose independent rect. 13 7
203 272.25 precipitation 0.1 10 < th dose dependent rect. 13 7
207 272.35 precipitation 0.1 270 < th dose independent rect. 12 18
208 272.35 precipitation 0.1 270 < th dose dependent rect. 12 18
243 273.65 temperature 10.0 10 > th dose independent rect. 13 7
245 273.65 atmosphere 1010.0 10 < th dose independent rect. 13 7
248 273.65 atmosphere 995.0 10 > th dose independent rect. 20 17
249 273.69 temperature 10.0 10 > th dose dependent rect. 13 7
259 273.98 precipitation 0.1 10 < th dose independent rect. 20 17
260 273.98 precipitation 0.1 10 < th dose dependent rect. 20 17
262 274.07 temperature 30.0 270 < th dose independent rect. 17 19
269 274.45 atmosphere 995.0 270 > th dose independent rect. 7 15
275 274.68 humidity 50.0 10 > th dose independent rect. 20 17
293 274.92 humidity 50.0 270 > th dose dependent rect. 22 9
308 275.17 humidity 90.0 10 < th dose independent rect. 13 7
341 276.09 atmosphere 1015.0 270 < th dose independent rect. 22 9
348 276.37 wind 9.0 10 < th dose independent rect. 20 17
371 276.92 radiation 1.0 10 > th dose independent rect. 8 5
377 277.03 wind 9.0 10 < th dose independent rect. 13 7
380 277.20 temperature 10.0 10 > th dose independent rect. 8 5
382 277.20 atmosphere 995.0 10 > th dose independent rect. 8 5
383 277.20 atmosphere 1015.0 10 < th dose independent rect. 8 5
384 277.20 precipitation 0.1 10 < th dose independent rect. 8 5
386 277.20 temperature 10.0 10 > th dose independent rect. 13 19
387 277.20 precipitation 0.1 10 < th dose dependent rect. 8 5
405 277.50 wind 1.0 10 > th dose independent rect. 13 7
494 278.62 temperature 10.0 1440 > th dose independent rect. 9 5
497 278.62 atmosphere 995.0 1440 > th dose independent rect. 9 5
498 278.62 temperature 10.0 1440 > th dose independent rect. 14 19
514 279.06 temperature 10.0 270 > th dose dependent rect. 7 4
516 279.12 atmosphere 1015.0 90 < th dose independent rect. 19 18
517 279.13 wind 9.0 10 < th dose independent rect. 8 5
549 279.57 radiation 40.0 270 < th dose dependent rect. 16 9
550 279.69 radiation 20.0 270 < th dose independent rect. 16 9
554 279.73 temperature 10.0 90 > th dose dependent rect. 13 19
565 279.98 temperature 30.0 270 < th dose independent rect. 8 2
599 280.74 radiation 40.0 270 < th dose independent rect. 7 4
621 281.31 humidity 90.0 90 < th dose independent rect. 7 6
635 281.53 atmosphere 1015.0 270 < th dose dependent rect. 13 3
644 281.76 temperature 10.0 90 > th dose dependent rect. 7 6
695 282.75 atmosphere 1015.0 270 < th dose independent rect. 17 19
729 283.39 wind 9.0 270 < th dose independent rect. 1 15
733 283.43 radiation 40.0 10 < th dose independent rect. 13 19
742 283.60 atmosphere 995.0 270 > th dose independent rect. 12 18
745 283.62 wind 1.0 270 > th dose independent rect. 17 19
746 283.66 wind 9.0 270 < th dose independent rect. 16 9
748 283.68 temperature 15.0 270 > th dose independent rect. 1 15
750 283.72 temperature 10.0 270 > th dose independent rect. 16 9
753 283.72 atmosphere 1015.0 270 < th dose independent rect. 1 15
759 283.85 atmosphere 1015.0 10 < th dose dependent rect. 13 7
774 283.91 humidity 50.0 270 > th dose independent rect. 7 15
788 284.08 radiation 40.0 90 < th dose independent rect. 13 6
794 284.33 atmosphere 995.0 270 > th dose independent rect. 11 20
814 284.75 wind 1.0 270 > th dose independent rect. 12 18
822 284.79 temperature 10.0 10 > th dose dependent rect. 8 5
844 285.28 wind 9.0 270 < th dose dependent rect. 12 5
859 285.52 atmosphere 995.0 10 > th dose independent rect. 13 7
908 286.70 humidity 50.0 270 > th dose independent rect. 16 9
909 286.71 humidity 50.0 270 > th dose independent rect. 13 3
913 286.77 atmosphere 1015.0 10 < th dose independent rect. 20 17
914 286.80 atmosphere 995.0 270 > th dose independent rect. 16 9
967 287.37 radiation 40.0 10 < th dose independent rect. 13 7