Os01g0645200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Bile acid transporter family protein.
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Os01g0645200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Bile acid transporter family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.78 | 0.293 | 12.3 | -0.0311 | 2.34 | 0.227 | 0.794 | -0.952 | -0.317 | 7.87 | 10.01 | 1429 | -- | -- |
| 40.16 | 0.295 | 12.3 | 0.12 | 2.33 | 0.192 | 0.777 | -- | -0.25 | 7.9 | 10.05 | 1424 | -- | -- |
| 40.04 | 0.295 | 12.3 | 0.0756 | 2.35 | 0.207 | -- | -1.03 | -0.299 | 7.9 | 10.27 | 1126 | -- | -- |
| 42.1 | 0.302 | 12.3 | 0.123 | 2.33 | 0.189 | -- | -- | -0.253 | 7.89 | 10.05 | 1424 | -- | -- |
| 223.83 | 0.697 | 12.6 | 0.881 | -- | -1.87 | -- | 2.29 | 0.127 | -- | 1.078 | 932 | -- | -- |
| 41.38 | 0.302 | 12.2 | 0.185 | 2.34 | -- | 0.799 | -- | -0.196 | 7.87 | -- | -- | -- | -- |
| 43.25 | 0.308 | 12.2 | 0.206 | 2.34 | -- | -- | -- | -0.197 | 7.87 | -- | -- | -- | -- |
| 129.91 | 0.531 | 12.6 | 0.523 | -- | -3.34 | -- | -- | -0.236 | -- | 1 | 966 | -- | -- |
| 42.65 | 0.304 | 12.3 | -- | 2.33 | 0.213 | -- | -- | -0.255 | 7.9 | 10 | 1424 | -- | -- |
| 339.68 | 0.861 | 12.3 | 0.233 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 44.37 | 0.312 | 12.2 | -- | 2.34 | -- | -- | -- | -0.22 | 7.86 | -- | -- | -- | -- |
| 109.03 | 0.486 | 12.1 | -- | -- | -2.78 | -- | -- | 0.44 | -- | 0.8894 | 958 | -- | -- |
| 341.11 | 0.862 | 12.3 | -- | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.22 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 15 |
| 4 | 35.50 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 6 | 35.60 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 8 | 35.65 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 14 |
| 10 | 35.73 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 12 |
| 13 | 35.93 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 1 |
| 72 | 36.87 | temperature | 25.0 | 90 | < th | dose independent | sin | 4 | NA |
| 76 | 36.89 | radiation | 20.0 | 720 | > th | dose independent | rect. | 12 | 1 |
| 77 | 36.89 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 79 | 36.92 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 80 | 36.94 | temperature | 25.0 | 270 | > th | dose independent | rect. | 1 | 12 |
| 85 | 37.01 | temperature | 25.0 | 90 | > th | dose independent | rect. | 3 | 12 |
| 96 | 37.12 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 101 | 37.15 | temperature | 25.0 | 10 | > th | dose independent | rect. | 3 | 13 |
| 107 | 37.17 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 119 | 37.22 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 126 | 37.25 | radiation | 20.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 129 | 37.25 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 138 | 37.28 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 196 | 37.44 | temperature | 25.0 | 10 | > th | dose independent | sin | 4 | NA |
| 204 | 37.46 | temperature | 25.0 | 90 | > th | dose independent | sin | 4 | NA |
| 241 | 37.54 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 24 | 17 |
| 280 | 37.62 | temperature | 25.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 300 | 37.65 | humidity | 80.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 336 | 37.70 | radiation | 1.0 | 720 | > th | dose independent | rect. | 8 | 7 |
| 343 | 37.71 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 347 | 37.71 | radiation | 1.0 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 360 | 37.73 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 395 | 37.79 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 16 | 12 |
| 430 | 37.83 | humidity | 70.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 435 | 37.83 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 456 | 37.86 | temperature | 30.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 488 | 37.91 | temperature | 25.0 | 270 | < th | dose independent | rect. | 16 | 5 |
| 500 | 37.92 | radiation | 10.0 | 720 | < th | dose independent | rect. | 12 | 6 |
| 507 | 37.93 | radiation | 10.0 | 720 | < th | dose independent | rect. | 14 | 4 |
| 533 | 37.97 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 535 | 37.97 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 538 | 37.98 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 539 | 37.98 | temperature | 20.0 | 30 | > th | dose independent | rect. | 22 | 6 |
| 558 | 38.01 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 559 | 38.01 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 570 | 38.02 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 9 | 6 |
| 575 | 38.03 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 601 | 38.05 | radiation | 10.0 | 720 | < th | dose independent | rect. | 9 | 9 |
| 631 | 38.09 | temperature | 25.0 | 10 | > th | dose independent | rect. | 4 | 7 |
| 654 | 38.11 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 691 | 38.14 | temperature | 25.0 | 90 | > th | dose independent | rect. | 16 | 8 |
| 717 | 38.15 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 737 | 38.18 | humidity | 60.0 | 720 | > th | dose independent | rect. | 16 | 1 |
| 745 | 38.18 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 9 | 9 |
| 780 | 38.22 | temperature | 20.0 | 90 | < th | dose independent | rect. | 16 | 10 |
| 831 | 38.25 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 892 | 38.30 | humidity | 70.0 | 720 | < th | dose independent | rect. | 16 | 4 |
| 925 | 38.31 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 16 | 8 |
| 937 | 38.32 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 959 | 38.34 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 974 | 38.35 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 17 | 23 |
| 987 | 38.35 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 17 | 23 |