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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0644600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glutelin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.8 (0.0436) R2 : 0.825
β1 : -1.1 (0.161) R2dD : 0.0186 R2D : -0.0148
β2 : 4.94 (0.111) R2dC : 0.767 R2C : 0.727
β3 : 1 (0.14) R2dE : 0.0244 R2E : -0.0234
β4 : 2.6 (0.497) R2dD*C : 0.0108 R2D*C : 0.00514
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.27 (0.0996) R2dN8 : 0.0985 R2N8 : 0.0155
σ : 0.797
deviance : 292.98
__
_____
C
peak time of C : 6.98
E
wheather : radiation
threshold : 12.31
memory length : 1409
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.48 0.804 6.8 -1.15 4.93 1 2.62 -0.578 -1.28 6.98 11.65 1408 -- --
292.98 0.797 6.8 -1.1 4.94 1 2.6 -- -1.27 6.98 12.31 1409 -- --
310 0.82 6.8 -1.11 4.93 0.994 -- -0.652 -1.28 6.95 12.85 1411 -- --
310.68 0.821 6.8 -1.02 4.93 1.01 -- -- -1.26 6.94 12.31 1425 -- --
1561.87 1.85 6.83 -0.683 -- 0.72 -- 0.46 -0.866 -- 12.85 1411 -- --
323.85 0.844 6.72 -0.778 4.92 -- 2.62 -- -0.954 6.9 -- -- -- --
341.44 0.865 6.72 -0.732 4.93 -- -- -- -0.961 6.88 -- -- -- --
1473.89 1.8 6.84 -0.597 -- 1.12 -- -- -0.935 -- 2.998 1501 -- --
330.64 0.847 6.76 -- 4.96 0.914 -- -- -1.16 6.99 19.96 1368 -- --
1613.53 1.88 6.83 -0.627 -- -- -- -- -0.867 -- -- -- -- --
355.58 0.882 6.71 -- 4.92 -- -- -- -0.879 6.89 -- -- -- --
1483.29 1.8 6.83 -- -- 1.12 -- -- -0.869 -- 2.998 1501 -- --
1623.89 1.88 6.81 -- -- -- -- -- -0.798 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 285.91 radiation 20 1440 < th dose dependent rect. 11 1
2 287.29 humidity 50 720 > th dose dependent rect. 15 11
7 288.91 radiation 10 1440 < th dose independent rect. 11 6
12 289.09 humidity 80 720 < th dose dependent rect. 18 14
18 289.34 radiation 20 1440 < th dose dependent rect. 10 4
28 289.96 radiation 10 1440 < th dose independent rect. 13 3
33 290.41 humidity 90 720 < th dose dependent rect. 18 7
41 290.72 radiation 10 1440 < th dose independent rect. 13 1
45 290.82 humidity 90 720 < th dose dependent rect. 18 10
83 291.67 radiation 10 1440 < th dose independent rect. 10 18
86 291.70 radiation 10 1440 > th dose independent rect. 10 3
90 291.72 radiation 10 1440 < th dose independent rect. 10 15
102 291.92 humidity 50 720 > th dose dependent sin 14 NA
109 292.05 radiation 10 1440 > th dose independent rect. 8 6
134 292.35 humidity 50 720 > th dose dependent rect. 14 18
144 292.51 radiation 10 1440 > th dose independent rect. 8 9
168 292.76 radiation 20 1440 < th dose dependent rect. 10 18
172 292.78 radiation 20 1440 < th dose independent rect. 11 1
175 292.80 radiation 20 1440 < th dose dependent rect. 10 12
177 292.82 radiation 10 1440 > th dose independent rect. 8 22
180 292.82 radiation 20 1440 < th dose dependent rect. 10 15
245 293.20 radiation 10 1440 > th dose independent sin 23 NA
260 293.21 humidity 90 720 < th dose dependent sin 13 NA
319 293.61 radiation 20 1440 < th dose dependent sin 22 NA
354 293.76 radiation 10 1440 < th dose independent sin 19 NA
397 294.14 radiation 10 1440 > th dose independent rect. 5 12
462 294.41 radiation 10 1440 > th dose independent rect. 16 23
476 294.49 radiation 10 1440 > th dose independent no NA NA
631 294.82 humidity 70 720 > th dose independent rect. 17 9
684 295.11 humidity 90 720 > th dose independent rect. 20 4
696 295.19 radiation 20 1440 < th dose independent rect. 2 12
703 295.21 radiation 20 1440 < th dose independent rect. 21 17
750 295.41 humidity 80 720 > th dose independent rect. 12 14
765 295.48 radiation 20 1440 < th dose dependent rect. 2 15
766 295.48 radiation 20 1440 < th dose dependent rect. 24 17
787 295.50 radiation 20 1440 < th dose dependent rect. 21 20
821 295.55 humidity 80 720 > th dose independent rect. 14 12