Os01g0644500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0644500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.09 | 0.446 | 8.54 | 2.72 | 0.967 | 0.734 | -0.0811 | 4.07 | 0.564 | 5.24 | 1.16 | 12655 | -- | -- |
| 106.22 | 0.48 | 8.61 | 2.38 | 1.11 | 0.791 | 0.121 | -- | 0.433 | 5.11 | 9.21 | 19441 | -- | -- |
| 89.35 | 0.44 | 8.53 | 2.75 | 0.87 | 0.765 | -- | 4.1 | 0.573 | 5.21 | 0.9608 | 18413 | -- | -- |
| 102.65 | 0.472 | 8.68 | 2.17 | 1.09 | 0.76 | -- | -- | 0.327 | 4.48 | 14.45 | 27937 | -- | -- |
| 133.94 | 0.539 | 8.53 | 2.78 | -- | 0.789 | -- | 3.8 | 0.561 | -- | 0.7904 | 22926 | -- | -- |
| 110.45 | 0.493 | 8.62 | 1.91 | 0.934 | -- | -0.0736 | -- | 0.469 | 4.73 | -- | -- | -- | -- |
| 110.46 | 0.492 | 8.62 | 1.91 | 0.934 | -- | -- | -- | 0.469 | 4.71 | -- | -- | -- | -- |
| 144.05 | 0.559 | 8.64 | 1.94 | -- | 0.638 | -- | -- | 0.321 | -- | 20.02 | 25797 | -- | -- |
| 197.53 | 0.655 | 8.69 | -- | 0.968 | 0.469 | -- | -- | 0.308 | 4.38 | 20.01 | 39287 | -- | -- |
| 156.68 | 0.585 | 8.63 | 1.94 | -- | -- | -- | -- | 0.494 | -- | -- | -- | -- | -- |
| 206.39 | 0.672 | 8.67 | -- | 0.969 | -- | -- | -- | 0.257 | 4.66 | -- | -- | -- | -- |
| 244 | 0.728 | 8.63 | -- | -- | 0.517 | -- | -- | 0.295 | -- | 20 | 25910 | -- | -- |
| 256.29 | 0.747 | 8.68 | -- | -- | -- | -- | -- | 0.278 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 87.37 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 2 | 88.24 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 3 | 88.29 | temperature | 15 | 30 | > th | dose dependent | sin | 13 | NA |
| 4 | 88.29 | humidity | 50 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 11 | 88.40 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 18 | 88.60 | temperature | 25 | 270 | < th | dose independent | rect. | 16 | 10 |
| 19 | 88.68 | humidity | 90 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 28 | 88.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 11 |
| 32 | 88.90 | temperature | 25 | 270 | < th | dose independent | sin | 14 | NA |
| 34 | 88.90 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 41 | 88.95 | humidity | 80 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 57 | 89.10 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 64 | 89.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 67 | 89.20 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 101 | 89.37 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 10 |
| 117 | 89.41 | temperature | 25 | 270 | > th | dose independent | rect. | 15 | 14 |
| 129 | 89.42 | radiation | 1 | 43200 | < th | dose dependent | sin | 4 | NA |
| 151 | 89.45 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 12 |
| 154 | 89.46 | radiation | 30 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 164 | 89.47 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 172 | 89.48 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 2 |
| 173 | 89.48 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 241 | 89.61 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 243 | 89.62 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 10 |
| 247 | 89.64 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 255 | 89.67 | temperature | 20 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 266 | 89.73 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 271 | 89.74 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 272 | 89.74 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 328 | 89.84 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 370 | 89.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 372 | 89.91 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 386 | 89.95 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 426 | 90.04 | humidity | 60 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 473 | 90.08 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 486 | 90.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 506 | 90.13 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 578 | 90.20 | temperature | 25 | 43200 | < th | dose dependent | sin | 15 | NA |
| 594 | 90.21 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 610 | 90.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 637 | 90.24 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 6 |
| 638 | 90.24 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 8 |
| 676 | 90.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 688 | 90.27 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 703 | 90.28 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 762 | 90.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 20 |
| 819 | 90.31 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 864 | 90.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 23 |
| 952 | 90.36 | temperature | 25 | 43200 | < th | dose dependent | rect. | 19 | 19 |
| 964 | 90.37 | temperature | 20 | 43200 | < th | dose dependent | sin | 7 | NA |
| 982 | 90.37 | temperature | 25 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 1000 | 90.38 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 2 |