Os01g0642900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Single-strand binding protein/Primosomal replication protein n family protein.
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Os01g0642900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Single-strand binding protein/Primosomal replication protein n family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.93 | 0.474 | 9.74 | 0.687 | 1.72 | 1.42 | 0.749 | -3.07 | 0.224 | 18.3 | 25.7 | 89 | -- | -- |
| 104.59 | 0.48 | 9.7 | 1.02 | 1.82 | 1.2 | 0.567 | -- | 0.303 | 18.4 | 25.7 | 89 | -- | -- |
| 103.22 | 0.473 | 9.73 | 0.72 | 1.72 | 1.41 | -- | -2.61 | 0.237 | 18.3 | 25.7 | 87 | -- | -- |
| 105.38 | 0.481 | 9.7 | 1.01 | 1.82 | 1.22 | -- | -- | 0.304 | 18.4 | 25.7 | 87 | -- | -- |
| 193.11 | 0.647 | 9.73 | 0.387 | -- | 2.62 | -- | -2.63 | 0.0507 | -- | 24.87 | 313 | -- | -- |
| 125.85 | 0.526 | 9.69 | 1.19 | 2.1 | -- | 0.873 | -- | 0.362 | 17.8 | -- | -- | -- | -- |
| 127.71 | 0.529 | 9.69 | 1.19 | 2.11 | -- | -- | -- | 0.366 | 17.8 | -- | -- | -- | -- |
| 200.01 | 0.659 | 9.7 | 0.742 | -- | 2.35 | -- | -- | 0.126 | -- | 24.7 | 314 | -- | -- |
| 131.11 | 0.533 | 9.72 | -- | 1.64 | 1.42 | -- | -- | 0.176 | 18.5 | 25.44 | 94 | -- | -- |
| 357.96 | 0.884 | 9.65 | 1.12 | -- | -- | -- | -- | 0.316 | -- | -- | -- | -- | -- |
| 164.9 | 0.601 | 9.72 | -- | 2.09 | -- | -- | -- | 0.233 | 17.8 | -- | -- | -- | -- |
| 214.5 | 0.682 | 9.72 | -- | -- | 2.45 | -- | -- | 0.026 | -- | 24.56 | 314 | -- | -- |
| 391.17 | 0.923 | 9.68 | -- | -- | -- | -- | -- | 0.191 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.49 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 3 | 99.68 | temperature | 25 | 90 | > th | dose dependent | sin | 0 | NA |
| 6 | 100.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 12 | 100.57 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 13 |
| 20 | 100.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 15 |
| 37 | 101.13 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 66 | 101.72 | temperature | 25 | 90 | > th | dose dependent | rect. | 2 | 20 |
| 102 | 101.99 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 168 | 102.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 228 | 102.93 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 279 | 103.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 14 |
| 474 | 104.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 781 | 106.49 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 15 |
| 796 | 106.54 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 825 | 106.63 | humidity | 60 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 827 | 106.64 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |