Os01g0640600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to LIMONENE cyclase like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0640600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to LIMONENE cyclase like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 276.44 | 0.781 | 3.12 | 0.556 | 0.514 | 1.34 | -2.82 | -1.71 | 0.248 | 6.81 | 19.3 | 4556 | -- | -- |
| 279.01 | 0.778 | 3.18 | 0.39 | 0.517 | 1.8 | -2.69 | -- | 0.182 | 6.85 | 19.1 | 4644 | -- | -- |
| 295.09 | 0.8 | 3.12 | 0.527 | 0.481 | 1.39 | -- | -1.7 | 0.257 | 6.68 | 19 | 4939 | -- | -- |
| 297.88 | 0.804 | 3.18 | 0.377 | 0.481 | 1.84 | -- | -- | 0.224 | 6.89 | 19.09 | 4882 | -- | -- |
| 307.12 | 0.816 | 3.13 | 0.533 | -- | 1.39 | -- | -1.72 | 0.264 | -- | 19.05 | 4952 | -- | -- |
| 326.49 | 0.847 | 3.28 | -0.686 | 0.497 | -- | -2.67 | -- | -0.219 | 6.78 | -- | -- | -- | -- |
| 344.6 | 0.869 | 3.27 | -0.73 | 0.488 | -- | -- | -- | -0.212 | 6.95 | -- | -- | -- | -- |
| 309.82 | 0.82 | 3.19 | 0.39 | -- | 1.85 | -- | -- | 0.228 | -- | 19.09 | 4922 | -- | -- |
| 300.15 | 0.807 | 3.18 | -- | 0.492 | 1.59 | -- | -- | 0.147 | 6.77 | 19.1 | 4869 | -- | -- |
| 357.12 | 0.883 | 3.29 | -0.72 | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
| 358.64 | 0.886 | 3.26 | -- | 0.48 | -- | -- | -- | -0.131 | 7.04 | -- | -- | -- | -- |
| 312.25 | 0.823 | 3.21 | -- | -- | 1.59 | -- | -- | 0.143 | -- | 19.03 | 4902 | -- | -- |
| 370.78 | 0.899 | 3.27 | -- | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 270.51 | wind | 7 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 2 | 270.69 | wind | 7 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 3 | 270.80 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 4 | 271.02 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 7 |
| 5 | 271.04 | wind | 7 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 7 | 271.20 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 11 | 271.57 | wind | 7 | 14400 | > th | dose dependent | rect. | 5 | 7 |
| 14 | 271.68 | wind | 7 | 14400 | > th | dose dependent | rect. | 7 | 5 |
| 16 | 271.88 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 19 | 271.96 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 25 | 272.18 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 43 | 272.69 | wind | 9 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 58 | 273.01 | wind | 7 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 61 | 273.05 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 63 | 273.06 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 13 |
| 64 | 273.10 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 67 | 273.12 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 105 | 273.33 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 118 | 273.38 | wind | 9 | 14400 | < th | dose independent | rect. | 21 | 15 |
| 128 | 273.40 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 8 |
| 133 | 273.43 | wind | 3 | 43200 | < th | dose dependent | sin | 8 | NA |
| 143 | 273.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 12 |
| 145 | 273.51 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 11 |
| 146 | 273.51 | wind | 9 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 156 | 273.56 | wind | 9 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 158 | 273.56 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 204 | 273.71 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 11 |
| 219 | 273.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 12 |
| 238 | 273.80 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 245 | 273.82 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 304 | 273.99 | wind | 3 | 43200 | < th | dose independent | sin | 7 | NA |
| 305 | 273.99 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 359 | 274.14 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 374 | 274.18 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 428 | 274.29 | wind | 3 | 43200 | > th | dose independent | sin | 7 | NA |
| 429 | 274.29 | wind | 9 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 433 | 274.30 | wind | 3 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 438 | 274.31 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 11 |
| 506 | 274.44 | wind | 9 | 14400 | > th | dose dependent | rect. | 21 | 16 |
| 551 | 274.53 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 635 | 274.76 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 730 | 275.03 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 749 | 275.08 | wind | 1 | 43200 | > th | dose dependent | sin | 7 | NA |
| 793 | 275.19 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 831 | 275.28 | humidity | 80 | 14400 | > th | dose dependent | rect. | 13 | 1 |