FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0640000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Carbonic anhydrase, prokaryotic and plant domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0342) R2 : 0.000251
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0244 (0.0721) R2dN8 : 0.000324 R2N8 : 0.000251
σ : 0.645
deviance : 190.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
184.88 0.633 2.92 -0.0912 0.157 -0.187 0.445 0.89 0.0208 8.95 40 10 -- --
186.48 0.641 2.92 -0.12 0.155 -0.21 0.118 -- 0.0149 9.06 39.82 6 -- --
185.57 0.634 2.92 -0.0912 0.157 -0.187 -- 0.89 0.0208 8.95 40 10 -- --
186.51 0.64 2.92 -0.115 0.155 -0.205 -- -- 0.0153 9.46 39.94 6 -- --
186.09 0.639 2.93 -0.0941 -- -0.255 -- 0.788 0.021 -- 38.64 6 -- --
187.88 0.643 2.92 -0.117 0.207 -- 0.0227 -- 0.0116 10.3 -- -- -- --
187.88 0.642 2.92 -0.116 0.206 -- -- -- 0.0117 10.3 -- -- -- --
187.79 0.638 2.93 -0.109 -- -0.274 -- -- 0.0183 -- 40 6 -- --
186.87 0.64 2.92 -- 0.155 -0.205 -- -- 0.0282 9.51 39.76 6 -- --
190.48 0.645 2.93 -0.12 -- -- -- -- 0.0111 -- -- -- -- --
188.24 0.642 2.92 -- 0.207 -- -- -- 0.0246 10.3 -- -- -- --
188.11 0.639 2.92 -- -- -0.276 -- -- 0.0243 -- 40 6 -- --
190.85 0.645 2.92 -- -- -- -- -- 0.0244 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.20 humidity 80.0 10 < th dose independent rect. 5 1
6 177.20 humidity 80.0 10 < th dose dependent rect. 5 1
21 177.72 temperature 20.0 30 > th dose independent rect. 22 1
22 177.72 humidity 80.0 30 > th dose independent rect. 22 1
23 177.77 temperature 15.0 30 > th dose dependent rect. 22 1
26 177.80 humidity 60.0 30 > th dose dependent rect. 22 1
28 177.81 wind 5.0 30 < th dose independent rect. 22 1
31 177.83 wind 1.0 30 > th dose independent rect. 22 1
35 177.84 temperature 10.0 30 > th dose independent rect. 22 1
37 177.84 temperature 30.0 30 < th dose independent rect. 22 1
38 177.84 humidity 50.0 30 > th dose independent rect. 22 1
41 177.84 atmosphere 995.0 30 > th dose independent rect. 22 1
42 177.84 atmosphere 1010.0 30 < th dose independent rect. 22 1
44 177.84 radiation 1.0 30 < th dose independent rect. 22 1
49 177.84 temperature 10.0 30 > th dose independent rect. 23 23
50 177.84 radiation 1.0 30 < th dose dependent rect. 22 1
55 177.85 wind 9.0 1440 < th dose independent rect. 23 1
56 177.85 temperature 10.0 1440 > th dose independent rect. 23 1
59 177.85 temperature 30.0 1440 < th dose independent rect. 23 1
63 177.85 humidity 50.0 1440 > th dose independent rect. 23 1
73 177.85 atmosphere 995.0 1440 > th dose independent rect. 23 1
74 177.85 radiation 1.0 1440 < th dose independent rect. 23 1
94 177.85 temperature 10.0 1440 > th dose independent rect. 24 23
97 177.85 wind 9.0 30 < th dose dependent rect. 22 1
98 177.85 atmosphere 995.0 30 > th dose dependent rect. 22 1
99 177.85 radiation 1.0 1440 < th dose dependent rect. 23 1
105 177.86 precipitation 0.1 30 < th dose independent rect. 22 1
109 177.86 precipitation 0.1 30 < th dose dependent rect. 22 1
110 177.87 wind 3.0 10 < th dose dependent rect. 18 1
113 177.92 atmosphere 1015.0 30 < th dose dependent rect. 22 1
115 177.96 humidity 90.0 30 < th dose independent rect. 22 1
119 178.01 radiation 40.0 14400 < th dose dependent rect. 23 1
121 178.07 wind 1.0 30 > th dose dependent rect. 22 1
130 178.30 wind 9.0 10 < th dose independent rect. 23 23
133 178.36 wind 3.0 30 < th dose independent rect. 18 1
134 178.36 temperature 30.0 30 < th dose dependent rect. 22 1
135 178.37 humidity 90.0 30 < th dose dependent rect. 22 1
178 179.06 wind 3.0 10 > th dose dependent rect. 6 1
195 179.90 wind 3.0 10 > th dose independent rect. 5 2
196 179.96 atmosphere 995.0 30 > th dose independent rect. 23 23
197 180.00 temperature 30.0 10 < th dose independent rect. 23 23
202 180.16 humidity 60.0 30 > th dose independent rect. 18 1
205 180.26 wind 3.0 10 > th dose dependent rect. 4 3
220 180.68 radiation 30.0 10 > th dose independent rect. 12 2
228 180.85 precipitation 0.1 30 < th dose independent rect. 23 23
230 180.85 precipitation 0.1 30 < th dose dependent rect. 23 23
233 180.91 radiation 1.0 30 < th dose dependent rect. 18 1
238 181.10 radiation 40.0 10 < th dose independent sin 14 NA
251 181.38 radiation 20.0 10 > th dose dependent rect. 12 2
259 181.62 radiation 40.0 30 < th dose independent rect. 23 23
263 181.69 wind 7.0 10 > th dose dependent rect. 12 2
267 181.82 radiation 10.0 10 > th dose independent rect. 6 1
293 181.82 radiation 10.0 10 > th dose dependent rect. 6 1
319 181.83 radiation 30.0 90 > th dose independent rect. 12 1
324 181.91 radiation 1.0 30 < th dose independent rect. 18 1
353 182.18 humidity 70.0 30 > th dose dependent rect. 12 1
372 182.29 humidity 80.0 270 < th dose dependent rect. 2 4
377 182.40 radiation 40.0 30 > th dose independent sin 14 NA
380 182.44 wind 7.0 30 > th dose independent rect. 12 3
394 182.63 radiation 40.0 30 > th dose dependent sin 13 NA
400 182.66 radiation 40.0 10 < th dose independent rect. 13 9
433 182.77 wind 3.0 90 > th dose independent rect. 11 2
461 182.83 temperature 30.0 30 < th dose dependent rect. 12 1
489 182.93 wind 3.0 90 > th dose independent rect. 9 4
492 182.95 temperature 30.0 10 > th dose independent rect. 10 1
505 183.04 wind 9.0 90 < th dose dependent rect. 23 22
509 183.09 humidity 80.0 270 < th dose independent rect. 2 1
510 183.09 wind 3.0 10 > th dose independent rect. 9 5
511 183.09 humidity 80.0 270 < th dose dependent rect. 2 1
522 183.20 atmosphere 1005.0 90 > th dose independent rect. 11 2
527 183.21 wind 1.0 10 > th dose dependent rect. 9 5
529 183.24 wind 3.0 30 < th dose dependent rect. 6 1
531 183.25 wind 9.0 10 < th dose independent rect. 13 23
545 183.34 wind 1.0 90 > th dose dependent rect. 11 2
577 183.45 precipitation 0.1 1440 < th dose independent rect. 23 1
578 183.45 precipitation 0.1 1440 < th dose dependent rect. 23 1
593 183.55 humidity 70.0 30 > th dose independent rect. 12 1
599 183.57 wind 5.0 10 < th dose dependent rect. 12 1
600 183.57 wind 1.0 10 > th dose dependent rect. 6 8
615 183.66 wind 3.0 90 > th dose independent rect. 21 17
616 183.66 radiation 10.0 14400 < th dose dependent rect. 12 1
618 183.66 atmosphere 995.0 90 > th dose dependent rect. 11 12
620 183.67 humidity 70.0 90 < th dose independent rect. 12 1
641 183.69 temperature 25.0 90 > th dose independent rect. 12 1
646 183.70 atmosphere 1005.0 10 > th dose dependent rect. 12 2
650 183.72 wind 3.0 10 > th dose independent rect. 12 1
651 183.72 temperature 30.0 10 < th dose independent rect. 12 1
652 183.72 humidity 80.0 30 > th dose dependent rect. 6 1
662 183.75 temperature 30.0 10 > th dose dependent rect. 12 1
664 183.76 atmosphere 1000.0 30 > th dose independent rect. 22 15
665 183.76 radiation 40.0 10 < th dose independent rect. 12 23
666 183.76 wind 1.0 10 > th dose dependent rect. 12 1
669 183.77 wind 7.0 30 < th dose independent rect. 13 9
678 183.80 atmosphere 1005.0 30 > th dose dependent rect. 6 1
683 183.81 wind 3.0 90 < th dose independent rect. 23 22
685 183.81 humidity 80.0 720 < th dose dependent rect. 18 12
687 183.82 atmosphere 995.0 90 > th dose dependent rect. 11 2
721 183.86 atmosphere 1005.0 720 > th dose independent rect. 11 1
727 183.87 wind 9.0 720 < th dose independent rect. 3 8
730 183.88 humidity 50.0 10 > th dose independent rect. 12 1
741 183.89 radiation 40.0 10 < th dose independent rect. 13 15
742 183.89 radiation 40.0 30 < th dose independent rect. 7 23
745 183.90 atmosphere 1005.0 30 > th dose independent rect. 18 1
747 183.90 temperature 30.0 10 < th dose independent rect. 24 11
749 183.90 precipitation 0.1 10 < th dose independent rect. 13 23
752 183.90 wind 1.0 90 > th dose dependent rect. 21 17
753 183.90 precipitation 0.1 10 < th dose dependent rect. 13 23
759 183.92 temperature 30.0 10 < th dose independent sin 9 NA
762 183.92 atmosphere 1005.0 30 > th dose independent rect. 10 21
764 183.93 atmosphere 1000.0 10 > th dose independent rect. 12 1
770 183.94 precipitation 0.1 43200 < th dose independent rect. 23 2
774 183.94 precipitation 0.1 43200 < th dose dependent rect. 23 2
776 183.94 humidity 60.0 720 < th dose dependent rect. 18 15
778 183.95 humidity 60.0 720 < th dose independent rect. 18 15
780 183.95 atmosphere 995.0 10 > th dose dependent rect. 12 1
787 183.97 wind 9.0 10 < th dose independent rect. 12 1
788 183.97 temperature 10.0 10 > th dose independent rect. 12 1
791 183.97 atmosphere 1015.0 10 < th dose independent rect. 12 1
793 183.97 precipitation 0.1 10 < th dose independent rect. 12 1
794 183.97 humidity 80.0 720 < th dose independent rect. 18 12
795 183.97 temperature 10.0 10 > th dose independent rect. 13 23
797 183.97 precipitation 0.1 10 < th dose dependent rect. 12 1
803 183.98 temperature 15.0 30 > th dose independent rect. 22 15
811 184.00 wind 5.0 10 < th dose independent rect. 12 1
820 184.01 humidity 80.0 720 < th dose independent rect. 21 2
822 184.01 radiation 20.0 14400 > th dose independent rect. 8 6
831 184.03 wind 3.0 720 > th dose independent rect. 11 2
845 184.05 radiation 20.0 14400 > th dose independent rect. 13 1
846 184.05 radiation 20.0 14400 > th dose independent rect. 9 3
863 184.05 atmosphere 995.0 10 > th dose independent rect. 13 23
870 184.06 atmosphere 1010.0 10 < th dose independent rect. 24 11
875 184.07 humidity 80.0 30 > th dose independent rect. 9 4
879 184.07 temperature 10.0 1440 > th dose independent rect. 14 9
882 184.07 temperature 10.0 1440 > th dose independent rect. 23 15
885 184.07 atmosphere 995.0 1440 > th dose independent rect. 23 15
893 184.08 radiation 20.0 14400 < th dose independent rect. 13 1
894 184.08 humidity 60.0 14400 > th dose independent rect. 13 2
900 184.08 wind 7.0 30 < th dose independent rect. 7 23
904 184.08 wind 1.0 90 > th dose dependent rect. 2 12
909 184.09 precipitation 0.1 30 < th dose independent rect. 22 15
919 184.09 precipitation 0.1 30 < th dose dependent rect. 22 15
926 184.10 wind 3.0 90 > th dose independent rect. 1 13
937 184.11 wind 7.0 10 > th dose independent rect. 9 6
945 184.11 humidity 80.0 10 < th dose independent rect. 22 9
962 184.11 temperature 25.0 270 > th dose dependent rect. 24 8
981 184.13 precipitation 0.1 30 < th dose independent rect. 13 9
985 184.13 precipitation 0.1 30 < th dose dependent rect. 13 9
987 184.14 humidity 70.0 30 < th dose independent rect. 18 1
990 184.14 temperature 10.0 30 > th dose independent rect. 13 9
992 184.14 atmosphere 1010.0 30 < th dose independent rect. 13 9
999 184.14 atmosphere 995.0 720 > th dose dependent rect. 11 2