Os01g0637800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MYB8 protein.
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Os01g0637800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MYB8 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 208.15 | 0.678 | 4.07 | 0.34 | 1.2 | 1.6 | 1.63 | -1.72 | -0.296 | 8.92 | 19.2 | 483 | -- | -- |
| 213.34 | 0.68 | 4.1 | 0.219 | 1.16 | 2.03 | 1.35 | -- | -0.316 | 8.75 | 19 | 513 | -- | -- |
| 216.19 | 0.685 | 4.07 | 0.342 | 1.21 | 1.61 | -- | -1.41 | -0.305 | 8.74 | 19.2 | 453 | -- | -- |
| 218.38 | 0.688 | 4.11 | 0.232 | 1.19 | 2 | -- | -- | -0.335 | 8.62 | 19.09 | 480 | -- | -- |
| 292.56 | 0.797 | 4.11 | 0.315 | -- | 1.82 | -- | -1.23 | -0.297 | -- | 19.39 | 578 | -- | -- |
| 285.06 | 0.792 | 4.17 | -0.465 | 1.36 | -- | 1.24 | -- | -0.629 | 8.71 | -- | -- | -- | -- |
| 289.75 | 0.797 | 4.17 | -0.428 | 1.37 | -- | -- | -- | -0.631 | 8.48 | -- | -- | -- | -- |
| 290.6 | 0.794 | 4.12 | 0.339 | -- | 2.23 | -- | -- | -0.251 | -- | 19.4 | 590 | -- | -- |
| 219.63 | 0.69 | 4.11 | -- | 1.2 | 1.92 | -- | -- | -0.364 | 8.53 | 19.1 | 482 | -- | -- |
| 394.1 | 0.928 | 4.2 | -0.422 | -- | -- | -- | -- | -0.617 | -- | -- | -- | -- | -- |
| 294.57 | 0.803 | 4.16 | -- | 1.36 | -- | -- | -- | -0.583 | 8.51 | -- | -- | -- | -- |
| 293.3 | 0.798 | 4.13 | -- | -- | 2.1 | -- | -- | -0.302 | -- | 19.3 | 589 | -- | -- |
| 398.79 | 0.932 | 4.19 | -- | -- | -- | -- | -- | -0.571 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 215.54 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 2 | 215.58 | temperature | 20 | 270 | < th | dose dependent | rect. | 22 | 11 |
| 3 | 216.19 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 19 |
| 4 | 216.30 | temperature | 20 | 720 | < th | dose independent | sin | 14 | NA |
| 14 | 216.86 | temperature | 20 | 270 | < th | dose dependent | sin | 9 | NA |
| 24 | 217.45 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 19 |
| 44 | 217.95 | temperature | 25 | 720 | < th | dose dependent | sin | 13 | NA |
| 55 | 218.21 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 75 | 218.76 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 20 |
| 134 | 219.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 147 | 219.73 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 163 | 219.91 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 212 | 220.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 224 | 220.50 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 226 | 220.54 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 233 | 220.66 | temperature | 20 | 270 | < th | dose independent | rect. | 1 | 23 |
| 235 | 220.68 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 23 |
| 241 | 220.75 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 254 | 220.87 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 255 | 220.88 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 268 | 221.04 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 272 | 221.05 | humidity | 80 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 298 | 221.27 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 306 | 221.33 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 308 | 221.34 | temperature | 20 | 720 | < th | dose dependent | rect. | 19 | 8 |
| 325 | 221.55 | temperature | 20 | 270 | < th | dose independent | rect. | 22 | 23 |
| 343 | 221.80 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 23 |
| 348 | 221.86 | temperature | 25 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 358 | 221.95 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 19 |
| 387 | 222.19 | temperature | 20 | 720 | > th | dose independent | rect. | 14 | 23 |
| 408 | 222.40 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 23 |
| 464 | 222.82 | temperature | 20 | 720 | < th | dose dependent | rect. | 21 | 5 |
| 513 | 223.33 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 545 | 223.59 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 547 | 223.61 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 598 | 223.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 6 |
| 664 | 224.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 10 |
| 692 | 224.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 9 |
| 710 | 224.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 832 | 225.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 835 | 225.34 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 848 | 225.46 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 8 |
| 887 | 225.73 | humidity | 90 | 14400 | > th | dose dependent | sin | 4 | NA |
| 927 | 225.92 | temperature | 20 | 1440 | < th | dose dependent | sin | 4 | NA |
| 993 | 226.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 998 | 226.34 | radiation | 30 | 4320 | < th | dose independent | rect. | 5 | 3 |