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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0637500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.49 (0.0423) R2 : 0.457
β1 : -1.12 (0.155) R2dD : 0.0654 R2D : 0.0458
β2 : 1.21 (0.117) R2dC : 0.141 R2C : 0.23
β3 : 2.73 (0.269) R2dE : 0.141 R2E : 0.194
β4 : -3.66 (0.508) R2dD*C : 0.0607 R2D*C : 0.0339
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.111 (0.0907) R2dN8 : 0.00239 R2N8 : -0.000432
σ : 0.79
deviance : 287.39
__
_____
C
peak time of C : 6.48
E
wheather : wind
threshold : 1.3
memory length : 72
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.08
open length of G : 1.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
283.25 0.791 3.51 -1.41 1.2 3.01 -3.48 -6.82 -0.0888 6.49 0.9405 96 4.01 1.03
287.39 0.79 3.49 -1.12 1.21 2.73 -3.66 -- -0.111 6.48 1.3 72 4.08 1.08
310.03 0.82 3.51 -1.42 1.22 2.72 -- -6.81 -0.0907 6.35 0.881 95 4.07 1.12
318.27 0.831 3.48 -1.13 1.24 2.62 -- -- -0.0961 6.34 1.2 68 4.07 1.12
369.73 0.896 3.52 -1.53 -- 3.39 -- -6.99 -0.0662 -- 0.8999 184 4.12 1.15
350.24 0.877 3.5 -1.02 1.61 -- -2.8 -- -0.208 6.27 -- -- -- --
369.51 0.9 3.49 -1.05 1.6 -- -- -- -0.199 6.17 -- -- -- --
381.01 0.909 3.49 -1.17 -- 2.77 -- -- -0.0941 -- 1.899 83 3.93 1.28
353.01 0.875 3.46 -- 1.25 2.35 -- -- 0.00171 6.41 1.205 68 4.03 1.12
502.13 1.05 3.52 -1.01 -- -- -- -- -0.163 -- -- -- -- --
398.74 0.934 3.47 -- 1.58 -- -- -- -0.0814 6.21 -- -- -- --
415.14 0.949 3.48 -- -- 2.4 -- -- 0.0369 -- 1.896 103 3.8 1.23
528.96 1.07 3.49 -- -- -- -- -- -0.0514 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 285.26 wind 1.0 90 < th dose independent rect. 4 1
2 286.83 wind 1.0 90 < th dose dependent rect. 4 1
3 288.39 temperature 20.0 90 > th dose dependent rect. 4 1
6 289.86 temperature 20.0 90 > th dose independent rect. 4 1
9 295.10 temperature 30.0 720 > th dose dependent rect. 18 1
23 295.32 humidity 90.0 90 > th dose independent rect. 4 1
30 297.74 atmosphere 995.0 4320 > th dose independent rect. 5 1
31 298.31 humidity 50.0 1440 < th dose independent rect. 16 1
33 298.45 humidity 80.0 90 > th dose dependent rect. 4 1
35 298.56 humidity 50.0 1440 < th dose dependent rect. 16 1
37 299.05 temperature 25.0 90 < th dose independent rect. 4 1
57 300.50 wind 3.0 10 < th dose dependent rect. 4 2
59 300.90 humidity 70.0 720 < th dose independent rect. 19 1
60 300.90 atmosphere 1005.0 90 > th dose independent rect. 4 1
73 301.51 humidity 70.0 720 < th dose dependent rect. 19 12
74 301.53 humidity 70.0 720 < th dose dependent rect. 19 1
85 301.55 humidity 50.0 1440 > th dose independent rect. 16 1
118 303.01 wind 1.0 90 < th dose dependent rect. 4 5
123 303.44 wind 7.0 1440 < th dose independent rect. 5 1
125 303.44 temperature 10.0 1440 > th dose independent rect. 5 1
128 303.44 temperature 30.0 1440 < th dose independent rect. 5 1
132 303.44 humidity 50.0 1440 > th dose independent rect. 5 1
142 303.44 atmosphere 1015.0 1440 < th dose independent rect. 5 1
143 303.44 radiation 20.0 1440 < th dose independent rect. 5 1
152 303.44 temperature 10.0 1440 > th dose independent rect. 6 23
155 303.49 temperature 30.0 720 > th dose independent rect. 18 1
170 303.58 radiation 1.0 90 < th dose independent rect. 4 1
172 303.61 radiation 10.0 90 < th dose dependent rect. 4 1
174 303.67 wind 1.0 90 < th dose independent rect. 4 6
177 303.70 wind 9.0 90 < th dose independent rect. 4 1
178 303.70 temperature 10.0 90 > th dose independent rect. 4 1
181 303.70 humidity 50.0 90 > th dose independent rect. 4 1
184 303.70 atmosphere 995.0 90 > th dose independent rect. 4 1
185 303.70 atmosphere 1010.0 90 < th dose independent rect. 4 1
190 303.70 temperature 10.0 90 > th dose independent rect. 5 23
191 303.74 precipitation 0.1 90 < th dose independent rect. 4 1
193 303.74 precipitation 0.1 90 < th dose dependent rect. 4 1
205 304.15 atmosphere 1015.0 90 < th dose dependent rect. 4 1
206 304.24 wind 9.0 90 < th dose independent rect. 5 23
214 305.10 radiation 30.0 90 < th dose dependent rect. 3 7
218 305.36 wind 3.0 10 < th dose dependent rect. 4 5
249 306.48 humidity 70.0 90 > th dose dependent rect. 3 6
250 306.54 wind 1.0 90 < th dose dependent rect. 4 12
289 307.64 atmosphere 995.0 90 > th dose dependent rect. 4 1
299 308.48 radiation 30.0 270 < th dose dependent rect. 1 9
310 309.11 radiation 20.0 90 < th dose independent rect. 3 7
343 309.65 humidity 80.0 90 > th dose dependent rect. 3 4
358 310.04 atmosphere 1005.0 270 > th dose independent rect. 1 5
361 310.11 wind 1.0 90 < th dose independent rect. 4 13
384 310.55 temperature 15.0 270 > th dose dependent rect. 1 5
391 310.63 humidity 80.0 90 > th dose independent rect. 3 6
393 310.72 humidity 90.0 90 > th dose independent rect. 3 4
423 311.02 humidity 80.0 270 > th dose dependent rect. 1 4
431 311.15 temperature 30.0 1440 < th dose independent rect. 18 5
469 311.40 humidity 70.0 10 > th dose dependent rect. 4 6
480 311.64 humidity 90.0 90 > th dose independent rect. 3 8
528 312.02 humidity 80.0 270 > th dose independent rect. 1 5
571 312.19 temperature 15.0 90 > th dose independent rect. 21 6
574 312.22 atmosphere 1005.0 90 > th dose independent rect. 3 5
655 312.69 temperature 20.0 270 > th dose independent rect. 1 4
659 312.73 temperature 15.0 10 > th dose independent rect. 6 22
664 312.76 humidity 50.0 1440 > th dose independent rect. 16 7
669 312.78 radiation 20.0 270 < th dose independent rect. 24 9
670 312.78 humidity 60.0 1440 > th dose independent rect. 17 12
683 312.87 humidity 50.0 1440 > th dose independent rect. 16 17
690 312.91 humidity 50.0 1440 < th dose independent rect. 16 18
731 312.99 temperature 30.0 1440 < th dose independent rect. 18 11
743 313.05 temperature 15.0 270 > th dose independent rect. 6 19
751 313.14 temperature 30.0 1440 < th dose independent rect. 18 13
756 313.17 wind 1.0 270 > th dose independent rect. 2 2
779 313.34 temperature 15.0 270 > th dose independent rect. 19 6
850 313.65 atmosphere 1010.0 90 < th dose independent rect. 3 6
859 313.70 temperature 15.0 270 > th dose independent rect. 21 3
974 314.04 atmosphere 995.0 90 > th dose independent rect. 5 23