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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0636500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Polygalacturonase PG2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.09 (0.0497) R2 : 0.541
β1 : -1.97 (0.183) R2dD : 0.126 R2D : 0.0879
β2 : 1.67 (0.136) R2dC : 0.166 R2C : 0.258
β3 : 3.44 (0.281) R2dE : 0.145 R2E : 0.194
β4 : -4.06 (0.594) R2dD*C : 0.0567 R2D*C : 0.0313
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.284 (0.107) R2dN8 : 0.0123 R2N8 : 0.00417
σ : 0.929
deviance : 397.63
__
_____
C
peak time of C : 6.72
E
wheather : wind
threshold : 0.9847
memory length : 80
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
391.7 0.93 4.15 -2.3 1.66 3.71 -4.12 -7.38 -0.349 6.71 1 97 4.02 1.02
397.63 0.929 4.09 -1.97 1.67 3.44 -4.06 -- -0.284 6.72 0.9847 80 4 1
432.67 0.969 4.16 -2.26 1.71 3.46 -- -7.69 -0.309 6.56 0.8967 96 4.02 1.1
443.71 0.981 4.11 -1.86 1.79 3.03 -- -- -0.321 6.55 0.9 78 4.03 1
549.74 1.09 4.17 -2.4 -- 3.98 -- -7.82 -0.198 -- 0.9997 217 4.03 1.11
502.12 1.05 4.14 -1.85 2.18 -- -3.23 -- -0.501 6.47 -- -- -- --
528.08 1.08 4.13 -1.89 2.17 -- -- -- -0.492 6.4 -- -- -- --
556.13 1.1 4.14 -1.94 -- 3.45 -- -- -0.171 -- 1.5 116 3.68 1.07
552.23 1.09 4.09 -- 1.82 2.75 -- -- -0.189 6.71 0.8 75 4.18 0.95
772.43 1.3 4.17 -1.84 -- -- -- -- -0.446 -- -- -- -- --
622.58 1.17 4.09 -- 2.14 -- -- -- -0.281 6.45 -- -- -- --
668.66 1.2 4.09 -- -- 2.92 -- -- -0.0539 -- 1.58 115 3.77 0.883
861.49 1.37 4.13 -- -- -- -- -- -0.242 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 394.06 wind 1.0 90 < th dose independent rect. 4 1
2 397.10 wind 1.0 90 < th dose dependent rect. 4 1
5 407.15 temperature 30.0 720 > th dose dependent rect. 18 1
20 410.60 humidity 50.0 1440 < th dose independent rect. 16 1
21 411.14 humidity 50.0 1440 < th dose dependent rect. 16 1
41 415.16 temperature 20.0 90 > th dose independent rect. 4 1
42 415.25 temperature 20.0 90 > th dose dependent rect. 4 1
43 415.93 humidity 90.0 90 > th dose dependent rect. 4 1
44 416.20 humidity 90.0 90 > th dose independent rect. 4 1
46 418.88 humidity 70.0 720 < th dose independent rect. 19 12
47 419.02 humidity 70.0 720 < th dose independent rect. 19 1
58 420.40 humidity 70.0 720 < th dose dependent rect. 19 12
59 420.47 humidity 70.0 720 < th dose dependent rect. 19 1
71 421.23 wind 3.0 10 < th dose dependent rect. 4 2
72 421.24 wind 1.0 90 < th dose dependent rect. 4 5
75 421.66 humidity 50.0 1440 > th dose independent rect. 16 1
81 423.36 temperature 25.0 90 < th dose independent rect. 4 1
82 423.70 wind 1.0 90 < th dose independent rect. 4 6
108 426.98 wind 1.0 90 < th dose dependent rect. 4 11
118 428.06 temperature 30.0 720 > th dose independent rect. 18 1
161 431.29 atmosphere 1015.0 90 < th dose dependent rect. 4 1
165 431.94 temperature 25.0 720 > th dose dependent rect. 21 2
184 432.90 humidity 90.0 10 > th dose independent rect. 4 2
222 435.71 wind 3.0 10 < th dose dependent rect. 4 6
275 437.16 radiation 1.0 90 < th dose independent rect. 4 1
279 437.25 radiation 10.0 90 < th dose dependent rect. 4 1
298 437.59 wind 9.0 90 < th dose independent rect. 4 1
299 437.59 temperature 10.0 90 > th dose independent rect. 4 1
302 437.59 humidity 50.0 90 > th dose independent rect. 4 1
305 437.59 atmosphere 995.0 90 > th dose independent rect. 4 1
306 437.59 atmosphere 1010.0 90 < th dose independent rect. 4 1
311 437.59 precipitation 0.1 90 < th dose independent rect. 4 1
312 437.59 temperature 10.0 90 > th dose independent rect. 5 23
313 437.59 precipitation 0.1 90 < th dose dependent rect. 4 1
360 439.17 atmosphere 1005.0 90 > th dose independent rect. 4 1
362 439.22 wind 9.0 90 < th dose independent rect. 5 23
369 439.71 humidity 70.0 1440 > th dose independent rect. 19 8
376 439.94 humidity 70.0 1440 > th dose independent rect. 19 6
379 440.10 humidity 70.0 1440 > th dose independent rect. 19 1
382 440.16 humidity 70.0 1440 > th dose independent rect. 19 4
410 441.32 wind 1.0 30 > th dose independent sin 6 NA
421 441.72 temperature 30.0 1440 < th dose independent rect. 18 6
427 441.93 atmosphere 995.0 4320 > th dose independent rect. 5 1
432 442.01 wind 7.0 1440 < th dose independent rect. 5 1
434 442.01 temperature 10.0 1440 > th dose independent rect. 5 1
437 442.01 temperature 30.0 1440 < th dose independent rect. 5 1
441 442.01 humidity 50.0 1440 > th dose independent rect. 5 1
451 442.01 atmosphere 1015.0 1440 < th dose independent rect. 5 1
452 442.01 radiation 20.0 1440 < th dose independent rect. 5 1
461 442.01 temperature 10.0 1440 > th dose independent rect. 6 23
514 442.65 wind 1.0 30 < th dose independent rect. 24 10
540 443.44 humidity 90.0 30 > th dose independent rect. 4 12
542 443.47 humidity 90.0 30 > th dose independent rect. 4 10
552 443.74 temperature 30.0 1440 < th dose independent rect. 18 11
560 444.04 temperature 30.0 1440 < th dose independent rect. 18 8
573 444.33 temperature 30.0 1440 < th dose independent rect. 18 14
637 446.05 humidity 90.0 30 > th dose dependent rect. 4 12
639 446.06 humidity 90.0 30 > th dose dependent rect. 4 10
683 446.63 humidity 90.0 10 > th dose independent rect. 4 8
713 447.04 humidity 60.0 1440 > th dose independent rect. 18 14
730 447.42 humidity 90.0 30 > th dose dependent rect. 4 8
752 447.58 atmosphere 1015.0 10 < th dose dependent rect. 4 2
831 448.31 radiation 1.0 720 > th dose independent rect. 18 1
843 448.37 atmosphere 995.0 90 > th dose dependent rect. 4 1
866 448.91 wind 1.0 30 < th dose independent sin 5 NA
882 449.30 temperature 15.0 10 > th dose independent rect. 6 22
904 449.43 radiation 10.0 10 < th dose independent rect. 4 2
923 449.82 wind 9.0 10 < th dose independent rect. 6 22
924 449.83 precipitation 0.1 10 < th dose independent rect. 4 2
925 449.83 precipitation 0.1 10 < th dose dependent rect. 4 2
926 449.84 wind 9.0 10 < th dose independent rect. 4 2
927 449.84 temperature 10.0 10 > th dose independent rect. 4 2
930 449.84 humidity 50.0 10 > th dose independent rect. 4 2
933 449.84 atmosphere 995.0 10 > th dose independent rect. 4 2
934 449.84 atmosphere 1010.0 10 < th dose independent rect. 4 2