Os01g0636100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0636100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.53 | 0.432 | 9.05 | 0.0484 | 0.985 | 1.13 | -0.122 | 2.76 | -0.466 | 17.3 | 10.24 | 20 | -- | -- |
| 88.74 | 0.439 | 9.1 | -0.306 | 0.954 | 0.957 | 0.42 | -- | -0.568 | 17.2 | 20.4 | 40 | -- | -- |
| 84.56 | 0.428 | 9.05 | 0.0394 | 0.986 | 1.12 | -- | 2.7 | -0.467 | 17.3 | 10.32 | 18 | -- | -- |
| 89.04 | 0.439 | 9.1 | -0.294 | 0.957 | 0.995 | -- | -- | -0.57 | 17.3 | 20.57 | 28 | -- | -- |
| 120.7 | 0.512 | 9.06 | -0.114 | -- | 1.99 | -- | 3.01 | -0.586 | -- | -12.35 | 150 | -- | -- |
| 101.95 | 0.473 | 9.06 | -0.103 | 1.26 | -- | 0.749 | -- | -0.408 | 16.6 | -- | -- | -- | -- |
| 103.43 | 0.476 | 9.06 | -0.0987 | 1.27 | -- | -- | -- | -0.405 | 16.6 | -- | -- | -- | -- |
| 120.05 | 0.51 | 9.09 | -0.38 | -- | 1.61 | -- | -- | -0.608 | -- | 24.1 | 135 | -- | -- |
| 91.36 | 0.445 | 9.09 | -- | 0.99 | 0.856 | -- | -- | -0.516 | 17.2 | 21.27 | 40 | -- | -- |
| 188.82 | 0.642 | 9.05 | -0.147 | -- | -- | -- | -- | -0.438 | -- | -- | -- | -- | -- |
| 103.68 | 0.476 | 9.06 | -- | 1.27 | -- | -- | -- | -0.394 | 16.6 | -- | -- | -- | -- |
| 124.16 | 0.519 | 9.08 | -- | -- | 1.53 | -- | -- | -0.552 | -- | 24.1 | 149 | -- | -- |
| 189.39 | 0.642 | 9.05 | -- | -- | -- | -- | -- | -0.421 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.05 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 77.99 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 17 | 79.72 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 21 |
| 23 | 80.28 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 27 | 80.49 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 57 | 81.85 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 58 | 81.85 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 61 | 81.85 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 62 | 81.85 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 94 | 82.17 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 95 | 82.18 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 164 | 82.50 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 165 | 82.51 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 171 | 82.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 172 | 82.58 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 182 | 82.69 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 194 | 82.77 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 3 |
| 206 | 82.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 219 | 83.05 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 220 | 83.05 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 221 | 83.05 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 240 | 83.15 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 288 | 83.33 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 290 | 83.34 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 291 | 83.34 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 312 | 83.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 338 | 83.95 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 371 | 84.30 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 377 | 84.45 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 394 | 84.56 | temperature | 10.0 | 10 | > th | dose dependent | no | NA | NA |
| 402 | 84.62 | temperature | 20.0 | 720 | > th | dose independent | rect. | 21 | 4 |
| 416 | 84.74 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 419 | 84.75 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 420 | 84.76 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 425 | 84.79 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 430 | 84.83 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 432 | 84.86 | temperature | 30.0 | 30 | < th | dose dependent | no | NA | NA |
| 436 | 84.90 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 438 | 84.94 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 21 |
| 440 | 84.94 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 9 | 21 |
| 475 | 85.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 8 |
| 478 | 85.29 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 502 | 85.46 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 13 | 13 |
| 507 | 85.47 | temperature | 20.0 | 1440 | > th | dose independent | sin | 16 | NA |
| 511 | 85.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 518 | 85.51 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 530 | 85.57 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 19 |
| 534 | 85.58 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 540 | 85.60 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 17 |
| 549 | 85.64 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 553 | 85.64 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 23 | 19 |
| 572 | 85.69 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 609 | 85.86 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 2 |
| 622 | 85.92 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 636 | 85.96 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 16 |
| 648 | 85.99 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 6 |
| 670 | 86.06 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 695 | 86.14 | temperature | 20.0 | 720 | < th | dose independent | sin | 21 | NA |
| 707 | 86.20 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 711 | 86.21 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 715 | 86.22 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 20 | 3 |
| 721 | 86.25 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 722 | 86.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 19 | 14 |
| 727 | 86.27 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 732 | 86.30 | temperature | 20.0 | 1440 | < th | dose independent | sin | 16 | NA |
| 734 | 86.30 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 13 | 15 |
| 735 | 86.30 | temperature | 25.0 | 720 | < th | dose dependent | sin | 22 | NA |
| 737 | 86.30 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 754 | 86.37 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 9 | 19 |
| 783 | 86.44 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 787 | 86.45 | temperature | 25.0 | 30 | > th | dose independent | rect. | 23 | 19 |
| 864 | 86.60 | temperature | 20.0 | 720 | < th | dose independent | rect. | 6 | 16 |
| 877 | 86.63 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 904 | 86.67 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 963 | 86.80 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 969 | 86.82 | temperature | 15.0 | 90 | > th | dose dependent | sin | 5 | NA |