Os01g0634600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os01g0634600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.04 | 0.388 | 2.89 | 0.0944 | 0.214 | -0.168 | 0.00473 | 0.181 | 0.138 | 10.9 | 25 | 11 | -- | -- |
| 68.13 | 0.384 | 2.89 | 0.0425 | 0.215 | -0.165 | 0.062 | -- | 0.12 | 10.9 | 24.9 | 18 | -- | -- |
| 68.04 | 0.384 | 2.89 | 0.0949 | 0.214 | -0.168 | -- | 0.182 | 0.138 | 10.8 | 25 | 11 | -- | -- |
| 68.14 | 0.384 | 2.89 | 0.0427 | 0.214 | -0.165 | -- | -- | 0.12 | 10.9 | 24.9 | 24 | -- | -- |
| 70.66 | 0.392 | 2.89 | 0.0688 | -- | -0.122 | -- | 0.159 | 0.13 | -- | 25.09 | 11 | -- | -- |
| 69.85 | 0.392 | 2.91 | 0.00235 | 0.181 | -- | -0.0272 | -- | 0.0306 | 8.82 | -- | -- | -- | -- |
| 69.85 | 0.391 | 2.91 | 0.0015 | 0.181 | -- | -- | -- | 0.0306 | 8.86 | -- | -- | -- | -- |
| 70.7 | 0.392 | 2.9 | 0.0241 | -- | -0.106 | -- | -- | 0.087 | -- | 24.94 | 10 | -- | -- |
| 68.19 | 0.385 | 2.89 | -- | 0.214 | -0.162 | -- | -- | 0.115 | 10.9 | 25 | 24 | -- | -- |
| 71.73 | 0.396 | 2.92 | 0.00156 | -- | -- | -- | -- | 0.0319 | -- | -- | -- | -- | -- |
| 69.85 | 0.391 | 2.91 | -- | 0.181 | -- | -- | -- | 0.0304 | 8.86 | -- | -- | -- | -- |
| 70.72 | 0.392 | 2.9 | -- | -- | -0.106 | -- | -- | 0.0846 | -- | 24.99 | 24 | -- | -- |
| 71.73 | 0.395 | 2.92 | -- | -- | -- | -- | -- | 0.0317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 51.99 | humidity | 90.0 | 30 | > th | dose independent | rect. | 8 | 2 |
| 3 | 52.20 | humidity | 90.0 | 30 | > th | dose dependent | rect. | 8 | 2 |
| 53 | 56.47 | radiation | 10.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 80 | 58.55 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 92 | 59.97 | wind | 1.0 | 90 | < th | dose dependent | rect. | 8 | 1 |
| 106 | 60.60 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 111 | 60.73 | wind | 5.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 112 | 60.74 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 115 | 60.76 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 116 | 60.76 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 118 | 60.76 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 124 | 60.80 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 127 | 60.80 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 130 | 60.80 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 132 | 60.80 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 134 | 60.80 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 139 | 60.80 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 140 | 60.80 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 141 | 60.80 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 146 | 60.80 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 148 | 60.86 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 156 | 61.13 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 157 | 61.15 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 160 | 61.34 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 8 | 1 |
| 161 | 61.34 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 162 | 61.45 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 165 | 61.59 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 6 | 3 |
| 166 | 61.59 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 6 | 3 |
| 168 | 61.68 | wind | 1.0 | 90 | < th | dose independent | rect. | 8 | 1 |
| 169 | 61.69 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 311 | 63.60 | temperature | 25.0 | 10 | < th | dose independent | rect. | 9 | 1 |
| 325 | 63.82 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 326 | 63.84 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 340 | 63.86 | humidity | 60.0 | 30 | < th | dose independent | rect. | 9 | 1 |
| 385 | 63.86 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 473 | 63.88 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 3 |
| 499 | 63.90 | humidity | 60.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 627 | 63.96 | wind | 1.0 | 10 | < th | dose independent | rect. | 8 | 2 |
| 633 | 64.00 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 6 |
| 634 | 64.01 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 9 | 1 |
| 663 | 64.06 | wind | 1.0 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 785 | 64.29 | radiation | 40.0 | 10 | > th | dose dependent | sin | 12 | NA |
| 794 | 64.33 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 2 | 7 |
| 868 | 64.51 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 20 | 13 |
| 897 | 64.62 | humidity | 60.0 | 1440 | > th | dose independent | rect. | 23 | 10 |