Os01g0633900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0633900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 163.36 | 0.601 | 4.36 | 1.17 | 0.369 | -1.29 | 0.764 | 4.29 | 0.369 | 8.61 | 20.85 | 1912 | -- | -- |
| 174.29 | 0.615 | 4.5 | 0.209 | 0.502 | -1.33 | 0.499 | -- | 0.0675 | 7.93 | 13.05 | 4302 | -- | -- |
| 165.18 | 0.599 | 4.36 | 1.18 | 0.378 | -1.28 | -- | 4.24 | 0.367 | 8.5 | 20.89 | 1873 | -- | -- |
| 175 | 0.616 | 4.5 | 0.217 | 0.518 | -1.34 | -- | -- | 0.0606 | 7.82 | 13 | 4317 | -- | -- |
| 171.95 | 0.611 | 4.36 | 1.27 | -- | -1.4 | -- | 4.49 | 0.399 | -- | 21.33 | 2017 | -- | -- |
| 206.92 | 0.674 | 4.56 | -0.426 | 0.511 | -- | 0.579 | -- | -0.208 | 8.44 | -- | -- | -- | -- |
| 207.96 | 0.675 | 4.56 | -0.409 | 0.512 | -- | -- | -- | -0.208 | 8.31 | -- | -- | -- | -- |
| 187.07 | 0.637 | 4.51 | 0.267 | -- | -1.44 | -- | -- | 0.0802 | -- | 9.25 | 4985 | -- | -- |
| 175.9 | 0.618 | 4.51 | -- | 0.523 | -1.23 | -- | -- | 0.0171 | 7.76 | 12.07 | 4241 | -- | -- |
| 222.49 | 0.697 | 4.57 | -0.406 | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
| 212.37 | 0.682 | 4.55 | -- | 0.51 | -- | -- | -- | -0.163 | 8.37 | -- | -- | -- | -- |
| 183.54 | 0.631 | 4.52 | -- | -- | -1.42 | -- | -- | 0.0585 | -- | 14.5 | 2070 | -- | -- |
| 226.83 | 0.703 | 4.56 | -- | -- | -- | -- | -- | -0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 2 | 162.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 8 | 163.12 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 15 | 163.29 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 5 |
| 18 | 163.30 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 24 | 163.35 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 4 |
| 28 | 163.43 | temperature | 25 | 4320 | < th | dose independent | rect. | 9 | 10 |
| 29 | 163.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 9 | 10 |
| 47 | 163.60 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 57 | 163.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 16 |
| 59 | 163.68 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 75 | 163.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 15 |
| 78 | 163.77 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 84 | 163.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 101 | 163.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 102 | 163.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 112 | 163.91 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 113 | 163.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 117 | 163.92 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 122 | 163.94 | radiation | 1 | 43200 | < th | dose dependent | sin | 9 | NA |
| 159 | 164.00 | temperature | 25 | 4320 | < th | dose independent | sin | 23 | NA |
| 165 | 164.01 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 171 | 164.02 | humidity | 90 | 43200 | > th | dose dependent | sin | 2 | NA |
| 186 | 164.05 | temperature | 25 | 4320 | > th | dose independent | sin | 23 | NA |
| 192 | 164.06 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 206 | 164.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 21 |
| 208 | 164.08 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 227 | 164.10 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 228 | 164.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 233 | 164.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 8 |
| 267 | 164.16 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 270 | 164.17 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 15 |
| 271 | 164.17 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 19 |
| 272 | 164.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 10 |
| 275 | 164.18 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 279 | 164.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 284 | 164.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 8 |
| 301 | 164.21 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 309 | 164.22 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 332 | 164.27 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 380 | 164.32 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 381 | 164.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 385 | 164.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 388 | 164.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 15 |
| 390 | 164.34 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 394 | 164.34 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 20 |
| 395 | 164.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 422 | 164.39 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 423 | 164.39 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 3 |
| 443 | 164.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 462 | 164.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 17 |
| 467 | 164.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 483 | 164.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 20 |
| 485 | 164.44 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 21 |
| 510 | 164.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 24 | 11 |
| 539 | 164.49 | radiation | 1 | 43200 | < th | dose dependent | no | NA | NA |
| 540 | 164.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 15 |
| 582 | 164.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 630 | 164.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 651 | 164.58 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 654 | 164.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 676 | 164.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 694 | 164.62 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 714 | 164.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 19 |
| 858 | 164.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 928 | 164.76 | radiation | 1 | 43200 | < th | dose independent | sin | 7 | NA |
| 943 | 164.78 | radiation | 1 | 43200 | > th | dose independent | sin | 7 | NA |
| 965 | 164.81 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 996 | 164.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |