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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0632000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0186) R2 : 0.00563
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0629 (0.0392) R2dN8 : 0.00727 R2N8 : 0.00563
σ : 0.35
deviance : 56.3
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
50.04 0.332 2.95 -0.274 0.0581 8.42 -0.264 -30.9 0.0607 5.25 1.501 193 -- --
119.87 0.51 2.92 0.065 0.0861 7.05 -0.207 -- 0.277 4.2 1.525 173 -- --
50.18 0.33 2.95 -0.274 0.0618 8.32 -- -30.4 0.0622 6.54 1.495 221 -- --
89.96 0.442 2.89 0.284 0.256 5.08 -- -- 0.207 8.81 2.5 52 -- --
50.38 0.331 2.95 -0.28 -- 8.33 -- -30.6 0.0632 -- 1.477 215 -- --
55.8 0.35 2.91 -0.056 0.03 -- -0.386 -- 0.0543 5.19 -- -- -- --
56.17 0.351 2.9 -0.0559 0.0289 -- -- -- 0.0562 6.2 -- -- -- --
56.2 0.349 2.91 -0.0541 -- -0.111 -- -- 0.0566 -- 2.472 48 -- --
56.24 0.349 2.9 -- 0.0274 -0.112 -- -- 0.0622 6.01 2.461 57 -- --
56.22 0.35 2.91 -0.0551 -- -- -- -- 0.0568 -- -- -- -- --
56.26 0.351 2.9 -- 0.0281 -- -- -- 0.0624 6.31 -- -- -- --
56.28 0.349 2.9 -- -- -0.125 -- -- 0.0626 -- 2.475 52 -- --
56.3 0.35 2.9 -- -- -- -- -- 0.0629 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 48.17 temperature 20.0 30 > th dose dependent rect. 2 1
2 48.19 wind 3.0 30 < th dose dependent rect. 2 1
3 48.24 wind 1.0 30 < th dose independent rect. 2 1
4 48.24 temperature 20.0 30 > th dose independent rect. 2 1
6 48.25 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 48.28 atmosphere 1000.0 30 > th dose dependent rect. 2 1
15 48.33 humidity 80.0 30 > th dose independent rect. 2 1
21 48.35 humidity 70.0 30 > th dose dependent rect. 2 1
22 48.36 humidity 50.0 30 > th dose dependent rect. 2 1
26 48.37 temperature 10.0 30 > th dose independent rect. 2 1
28 48.37 temperature 30.0 30 < th dose independent rect. 2 1
29 48.37 humidity 50.0 30 > th dose independent rect. 2 1
33 48.37 atmosphere 1010.0 30 < th dose independent rect. 2 1
35 48.37 radiation 1.0 30 < th dose independent rect. 2 1
40 48.37 precipitation 0.1 30 < th dose independent rect. 2 1
41 48.37 temperature 10.0 30 > th dose independent rect. 3 23
42 48.37 radiation 1.0 30 < th dose dependent rect. 2 1
47 48.37 precipitation 0.1 30 < th dose dependent rect. 2 1
51 48.54 atmosphere 1015.0 30 < th dose dependent rect. 2 1
55 48.72 temperature 30.0 30 < th dose dependent rect. 2 1
60 48.80 radiation 1.0 14400 < th dose dependent rect. 3 1
67 48.99 wind 1.0 30 > th dose independent rect. 2 1
82 49.13 wind 9.0 1440 < th dose independent rect. 3 1
83 49.13 temperature 10.0 1440 > th dose independent rect. 3 1
86 49.13 temperature 30.0 1440 < th dose independent rect. 3 1
90 49.13 humidity 50.0 1440 > th dose independent rect. 3 1
99 49.13 atmosphere 995.0 1440 > th dose independent rect. 3 1
100 49.13 radiation 1.0 1440 < th dose independent rect. 3 1
120 49.13 temperature 10.0 1440 > th dose independent rect. 4 23
124 49.13 radiation 1.0 1440 < th dose dependent rect. 3 1
162 49.64 atmosphere 995.0 30 > th dose independent rect. 3 23
165 49.74 wind 9.0 30 < th dose independent rect. 3 23
172 49.96 precipitation 0.1 30 < th dose independent rect. 3 23
173 49.96 precipitation 0.1 30 < th dose dependent rect. 3 23
174 50.02 precipitation 0.1 270 > th dose dependent rect. 16 3
176 50.04 precipitation 0.1 270 > th dose independent rect. 16 1
178 50.05 atmosphere 1000.0 270 < th dose independent rect. 16 1
182 50.12 atmosphere 1000.0 270 < th dose dependent rect. 16 1
184 50.14 precipitation 0.1 270 > th dose independent rect. 16 3
198 50.33 temperature 20.0 10 < th dose independent rect. 11 9
203 50.35 temperature 20.0 10 < th dose independent rect. 19 1
231 50.51 precipitation 0.1 270 > th dose dependent rect. 10 8
244 50.76 wind 1.0 10 > th dose independent rect. 11 23
257 51.00 wind 1.0 10 < th dose independent rect. 9 18
271 51.27 wind 1.0 30 < th dose independent rect. 24 3
279 51.40 humidity 70.0 30 < th dose dependent rect. 10 1
299 51.69 atmosphere 1005.0 10 < th dose independent rect. 20 1
304 51.72 humidity 70.0 30 < th dose independent rect. 10 1
306 51.73 precipitation 0.1 270 > th dose dependent sin 21 NA
313 51.79 radiation 10.0 30 > th dose dependent rect. 10 1
314 51.80 radiation 20.0 30 > th dose independent rect. 10 1
316 51.81 wind 1.0 30 < th dose independent rect. 10 1
317 51.81 temperature 10.0 1440 > th dose independent rect. 11 1
321 51.81 atmosphere 995.0 1440 > th dose independent rect. 11 1
324 51.81 precipitation 0.1 1440 < th dose independent rect. 11 1
326 51.81 temperature 10.0 1440 > th dose independent rect. 12 23
329 51.81 wind 1.0 30 < th dose dependent rect. 10 1
330 51.81 precipitation 0.1 1440 < th dose dependent rect. 11 1
331 51.82 atmosphere 1005.0 30 > th dose independent rect. 10 1
332 51.82 atmosphere 1010.0 30 < th dose independent rect. 10 1
336 51.83 atmosphere 1000.0 30 > th dose dependent rect. 10 1
340 51.85 wind 1.0 10 < th dose independent rect. 22 5
351 51.86 temperature 30.0 30 < th dose independent rect. 10 1
369 51.90 temperature 20.0 30 > th dose independent rect. 10 1
372 51.90 wind 7.0 30 < th dose dependent rect. 10 1
374 51.90 temperature 10.0 30 > th dose dependent rect. 10 1
377 51.91 temperature 10.0 30 > th dose independent rect. 10 1
379 51.91 humidity 50.0 30 > th dose independent rect. 10 1
384 51.91 precipitation 0.1 30 < th dose independent rect. 10 1
385 51.91 temperature 10.0 30 > th dose independent rect. 11 23
387 51.91 precipitation 0.1 30 < th dose dependent rect. 10 1
390 51.92 wind 1.0 30 > th dose independent rect. 10 1
395 51.96 humidity 50.0 30 > th dose independent rect. 3 23
405 52.08 radiation 40.0 30 < th dose independent rect. 10 1
426 52.19 atmosphere 1015.0 30 < th dose dependent rect. 10 1
434 52.24 temperature 30.0 30 < th dose independent rect. 3 23
437 52.25 wind 1.0 30 > th dose dependent rect. 10 1
458 52.32 radiation 40.0 30 < th dose dependent rect. 10 1
468 52.36 wind 1.0 10 > th dose independent sin 18 NA
473 52.38 wind 1.0 30 > th dose independent rect. 3 23
474 52.38 humidity 50.0 30 > th dose dependent rect. 10 1
492 52.47 wind 9.0 30 < th dose independent rect. 11 23
507 52.54 wind 1.0 30 < th dose dependent rect. 9 18
576 52.68 temperature 25.0 90 < th dose dependent rect. 18 1
577 52.69 wind 1.0 10 > th dose independent rect. 21 23
609 52.77 wind 1.0 10 > th dose independent sin 6 NA
653 52.83 wind 1.0 10 > th dose independent no NA NA
654 52.83 atmosphere 1015.0 30 < th dose independent rect. 3 23
671 52.89 temperature 25.0 10 < th dose dependent rect. 20 1
677 52.90 temperature 20.0 10 > th dose independent sin 21 NA
684 52.91 wind 1.0 10 < th dose independent sin 18 NA
685 52.91 temperature 20.0 10 < th dose independent sin 21 NA
686 52.91 atmosphere 1000.0 720 > th dose independent rect. 11 4
747 53.09 temperature 25.0 270 > th dose independent rect. 23 4
783 53.16 wind 1.0 10 < th dose independent rect. 2 10
789 53.18 wind 1.0 10 < th dose independent rect. 2 8
796 53.20 wind 1.0 10 < th dose independent rect. 24 12
933 53.46 humidity 90.0 90 < th dose independent rect. 2 1
949 53.48 radiation 20.0 30 < th dose dependent rect. 3 23
959 53.51 precipitation 0.1 270 > th dose dependent rect. 16 18
971 53.54 precipitation 0.1 270 > th dose independent sin 20 NA
984 53.55 wind 1.0 10 > th dose independent rect. 22 11
992 53.56 precipitation 0.1 270 < th dose independent sin 21 NA
994 53.56 precipitation 0.1 270 < th dose dependent sin 21 NA