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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0631700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ser Thr specific protein kinase-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.0422) R2 : 0.34
β1 : -1.64 (0.157) R2dD : 0.172 R2D : 0.0832
β2 : 2.01 (0.226) R2dC : 0.592 R2C : -0.241
β3 : -1.49 (0.216) R2dE : 0.356 R2E : -0.475
β4 : -4.5 (0.833) R2dD*C : 0.202 R2D*C : -0.141
β5 : 3.79 (0.813) R2dD*E : 0.149 R2D*E : -0.179
γ1 : -0.543 (0.09) R2dN8 : 0.0712 R2N8 : 0.000115
σ : 0.79
deviance : 282.96
__
_____
C
peak time of C : 0.756
E
wheather : temperature
threshold : 14.94
memory length : 307
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.9
open length of G : 7.25

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
282.96 0.79 3.64 -1.64 2.01 -1.49 -4.5 3.79 -0.543 0.756 14.94 307 18.9 7.25
298.76 0.805 3.63 -1.43 1.99 -1.62 -1.5 -- -0.485 1.11 14.95 346 18.9 7.1
308.24 0.818 3.6 -1.49 1.54 -1.04 -- 0.407 -0.435 0.51 15.72 207 20.6 5.46
300.79 0.808 3.62 -1.39 2.24 -1.72 -- -- -0.467 1.02 16.13 337 18.7 7.53
329.31 0.845 3.58 -1.46 -- -0.591 -- 1.92 -0.409 -- 13.83 1042 22.7 1.97
331.84 0.854 3.62 -1.54 0.654 -- -1.24 -- -0.452 24 -- -- -- --
338.51 0.862 3.61 -1.49 0.658 -- -- -- -0.446 24 -- -- -- --
340.11 0.859 3.59 -1.45 -- -0.634 -- -- -0.425 -- 14 1040 22.7 2.63
355.69 0.878 3.59 -- 2.35 -1.79 -- -- -0.295 1.11 16.23 337 18.6 8.2
365.81 0.894 3.6 -1.47 -- -- -- -- -0.437 -- -- -- -- --
396.88 0.932 3.57 -- 0.64 -- -- -- -0.281 23.9 -- -- -- --
368.03 0.893 3.54 -- -- -1.19 -- -- -0.231 -- 13.7 14123 18.7 8.08
422.64 0.96 3.56 -- -- -- -- -- -0.274 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 285.67 temperature 15.0 270 > th dose independent rect. 19 7
2 285.94 atmosphere 1010.0 90 < th dose dependent rect. 16 6
10 287.93 temperature 15.0 10 > th dose independent rect. 23 17
24 289.35 atmosphere 1010.0 270 < th dose dependent rect. 16 3
34 291.56 atmosphere 1010.0 270 < th dose dependent rect. 17 1
40 292.16 temperature 15.0 30 > th dose independent rect. 20 21
44 292.45 atmosphere 1015.0 270 < th dose dependent rect. 14 7
53 293.09 temperature 15.0 270 > th dose independent rect. 22 2
58 293.73 atmosphere 1015.0 90 < th dose independent rect. 16 17
65 294.58 temperature 15.0 270 > th dose independent rect. 20 18
76 296.10 temperature 15.0 270 > th dose independent rect. 19 20
84 296.78 temperature 15.0 270 > th dose independent rect. 9 16
86 296.80 atmosphere 995.0 90 > th dose independent rect. 16 17
87 296.85 precipitation 0.1 90 < th dose independent rect. 16 17
88 296.85 precipitation 0.1 90 < th dose dependent rect. 16 17
90 296.95 temperature 15.0 10 > th dose independent rect. 10 17
91 297.00 wind 1.0 90 > th dose independent rect. 9 7
92 297.08 temperature 15.0 10 > th dose independent rect. 22 5
93 297.09 atmosphere 1005.0 270 < th dose independent rect. 16 3
94 297.12 temperature 10.0 90 > th dose independent rect. 9 7
95 297.12 atmosphere 1015.0 90 < th dose independent rect. 9 7
96 297.12 temperature 10.0 90 > th dose independent rect. 16 17
98 297.15 precipitation 0.1 90 < th dose independent rect. 9 7
99 297.15 precipitation 0.1 90 < th dose dependent rect. 9 7
106 297.48 humidity 50.0 90 > th dose independent rect. 9 7
107 297.51 atmosphere 995.0 90 > th dose independent rect. 9 7
112 297.88 wind 9.0 90 < th dose independent rect. 16 17
118 297.96 atmosphere 1005.0 270 < th dose independent rect. 17 1
132 298.54 wind 9.0 90 < th dose independent rect. 9 7
138 298.66 atmosphere 1015.0 10 < th dose independent rect. 17 17
145 298.84 radiation 40.0 90 < th dose independent rect. 16 17
147 298.88 temperature 15.0 10 > th dose independent rect. 20 8
155 299.25 radiation 40.0 90 < th dose dependent rect. 16 17
163 299.55 humidity 70.0 720 < th dose independent rect. 17 2
169 299.65 humidity 50.0 270 > th dose independent rect. 9 16
172 299.71 atmosphere 1015.0 270 < th dose independent rect. 14 7
188 299.94 humidity 50.0 270 > th dose independent rect. 18 22
195 300.15 humidity 50.0 270 > th dose independent rect. 7 9
196 300.17 atmosphere 1015.0 90 < th dose independent rect. 16 7
210 300.32 wind 1.0 90 > th dose independent rect. 16 6
211 300.33 atmosphere 1000.0 270 > th dose independent rect. 19 7
228 300.52 precipitation 0.1 90 < th dose independent rect. 16 6
229 300.52 precipitation 0.1 90 < th dose dependent rect. 16 6
230 300.53 atmosphere 995.0 90 > th dose independent rect. 16 6
241 300.70 humidity 80.0 720 < th dose dependent rect. 17 2
244 300.76 radiation 30.0 90 < th dose independent rect. 16 6
246 300.76 temperature 10.0 90 > th dose dependent rect. 16 6
247 300.77 temperature 10.0 90 > th dose independent rect. 16 6
262 300.91 precipitation 0.1 270 < th dose independent rect. 3 16
263 300.91 precipitation 0.1 270 < th dose dependent rect. 3 16
266 300.94 humidity 50.0 90 > th dose independent rect. 22 18
267 300.94 precipitation 0.1 90 < th dose independent rect. 22 18
269 300.94 precipitation 0.1 90 < th dose dependent rect. 22 18
271 300.96 precipitation 0.1 270 < th dose independent rect. 14 6
272 300.96 precipitation 0.1 270 < th dose dependent rect. 14 6
275 301.04 atmosphere 995.0 90 > th dose independent rect. 22 18
276 301.06 wind 1.0 10 > th dose independent rect. 9 8
278 301.07 wind 1.0 270 > th dose independent rect. 7 8
285 301.16 humidity 50.0 90 > th dose independent rect. 16 17
293 301.35 temperature 10.0 270 > th dose independent rect. 14 6
296 301.35 atmosphere 995.0 270 > th dose independent rect. 20 18
297 301.38 wind 1.0 270 > th dose independent rect. 14 6
298 301.38 temperature 10.0 270 > th dose independent rect. 7 8
299 301.38 atmosphere 1015.0 270 < th dose independent rect. 7 8
302 301.44 wind 9.0 270 < th dose independent rect. 14 6
303 301.44 wind 7.0 270 < th dose independent rect. 1 9
304 301.45 precipitation 0.1 270 < th dose independent rect. 16 2
305 301.45 humidity 50.0 270 > th dose independent rect. 20 18
306 301.45 precipitation 0.1 270 < th dose dependent rect. 16 2
315 301.51 temperature 30.0 270 < th dose independent rect. 19 8
316 301.51 humidity 50.0 270 > th dose independent rect. 19 8
318 301.51 radiation 1.0 270 < th dose independent rect. 19 8
323 301.51 temperature 10.0 270 > th dose independent rect. 3 16
324 301.51 atmosphere 1015.0 270 < th dose independent rect. 3 16
325 301.51 radiation 1.0 270 < th dose dependent rect. 19 8
332 301.54 precipitation 0.1 270 < th dose independent rect. 19 8
333 301.54 precipitation 0.1 270 < th dose dependent rect. 19 8
335 301.56 wind 9.0 270 < th dose independent rect. 16 2
337 301.57 atmosphere 995.0 270 > th dose independent rect. 18 22
339 301.61 precipitation 0.1 270 < th dose independent rect. 20 18
340 301.61 precipitation 0.1 270 < th dose dependent rect. 20 18
341 301.63 temperature 10.0 270 > th dose dependent rect. 16 2
342 301.65 precipitation 0.1 270 < th dose independent rect. 7 8
344 301.65 precipitation 0.1 270 < th dose dependent rect. 7 8
345 301.68 atmosphere 995.0 270 > th dose independent rect. 7 8
350 301.76 wind 9.0 90 < th dose independent rect. 16 6
357 301.79 wind 1.0 270 > th dose independent rect. 16 2
361 301.83 temperature 10.0 270 > th dose independent rect. 16 2
365 301.83 radiation 40.0 270 < th dose independent rect. 16 2
367 301.85 atmosphere 995.0 270 > th dose independent rect. 9 16
377 301.96 wind 9.0 270 < th dose independent rect. 3 16
378 301.96 humidity 50.0 10 > th dose independent rect. 17 17
381 301.99 wind 9.0 270 < th dose independent rect. 7 8
383 302.03 wind 9.0 270 < th dose independent rect. 19 8
415 302.20 wind 9.0 90 < th dose independent rect. 22 18
416 302.21 temperature 10.0 270 > th dose dependent rect. 14 6
417 302.23 wind 9.0 270 < th dose independent rect. 20 18
418 302.26 precipitation 0.1 270 < th dose independent rect. 15 4
420 302.26 precipitation 0.1 270 < th dose dependent rect. 15 4
427 302.30 temperature 15.0 270 > th dose independent rect. 1 9
430 302.32 precipitation 0.1 270 < th dose independent rect. 1 8
431 302.32 precipitation 0.1 270 < th dose dependent rect. 1 8
440 302.37 humidity 50.0 270 > th dose independent rect. 1 8
441 302.37 atmosphere 995.0 270 > th dose independent rect. 1 8
442 302.37 atmosphere 1015.0 270 < th dose independent rect. 1 8
453 302.43 wind 1.0 270 > th dose independent rect. 15 16
454 302.44 atmosphere 995.0 10 > th dose independent rect. 17 17
455 302.44 radiation 40.0 10 < th dose dependent rect. 17 17
456 302.48 precipitation 0.1 270 < th dose independent rect. 18 22
457 302.48 precipitation 0.1 270 < th dose dependent rect. 18 22
458 302.49 wind 1.0 90 > th dose independent rect. 22 18
462 302.52 temperature 10.0 270 > th dose dependent rect. 15 4
470 302.60 temperature 10.0 270 > th dose independent rect. 15 4
508 302.73 wind 9.0 270 < th dose independent rect. 15 4
511 302.74 precipitation 0.1 10 < th dose independent rect. 17 17
513 302.74 precipitation 0.1 10 < th dose dependent rect. 17 17
523 302.81 temperature 10.0 10 > th dose independent rect. 10 7
525 302.81 atmosphere 1015.0 10 < th dose independent rect. 10 7
526 302.81 precipitation 0.1 10 < th dose independent rect. 10 7
527 302.81 temperature 10.0 10 > th dose independent rect. 17 17
528 302.81 precipitation 0.1 10 < th dose dependent rect. 10 7
529 302.82 wind 1.0 270 > th dose independent rect. 15 4
534 302.86 humidity 70.0 720 > th dose independent rect. 16 5
536 302.86 atmosphere 995.0 270 > th dose independent rect. 19 20
537 302.87 atmosphere 995.0 10 > th dose independent rect. 16 6
545 302.91 temperature 30.0 270 < th dose independent rect. 1 8
547 302.93 precipitation 0.1 270 < th dose independent rect. 19 20
548 302.93 precipitation 0.1 270 < th dose dependent rect. 19 20
557 303.00 radiation 40.0 30 < th dose dependent rect. 16 6
563 303.06 radiation 20.0 10 < th dose independent rect. 16 6
572 303.10 wind 9.0 90 < th dose dependent rect. 2 9
573 303.11 temperature 30.0 90 < th dose independent rect. 9 7
578 303.13 humidity 90.0 270 < th dose independent rect. 16 2
579 303.13 humidity 50.0 10 > th dose independent rect. 17 5
590 303.16 atmosphere 995.0 10 > th dose independent rect. 10 7
611 303.22 precipitation 0.1 270 < th dose independent rect. 9 16
612 303.22 precipitation 0.1 270 < th dose dependent rect. 9 16
625 303.27 wind 1.0 270 > th dose independent rect. 2 17
653 303.45 humidity 50.0 10 > th dose independent rect. 10 7
681 303.54 radiation 20.0 10 < th dose independent rect. 17 17
692 303.57 atmosphere 995.0 270 > th dose independent rect. 14 6
712 303.63 wind 9.0 270 < th dose independent rect. 19 20
717 303.67 radiation 30.0 43200 < th dose independent rect. 17 6
749 303.74 wind 9.0 270 < th dose independent rect. 18 22
757 303.76 wind 9.0 270 < th dose independent rect. 9 16
773 303.82 atmosphere 995.0 270 > th dose independent rect. 3 16
832 303.94 wind 1.0 14400 > th dose independent rect. 14 10
846 304.01 temperature 30.0 270 < th dose independent rect. 20 18
847 304.02 atmosphere 995.0 270 > th dose independent rect. 16 2
855 304.05 wind 9.0 10 < th dose independent rect. 10 7
909 304.15 wind 9.0 270 < th dose dependent rect. 14 6
937 304.25 radiation 40.0 270 < th dose independent rect. 1 8
946 304.29 temperature 20.0 30 > th dose independent rect. 17 3
949 304.31 radiation 40.0 270 < th dose dependent rect. 16 2
965 304.35 humidity 50.0 10 > th dose independent rect. 17 3
996 304.47 radiation 1.0 90 > th dose independent rect. 9 7