FiT-DB / Search/ Help/ Sample detail

Os01g0629600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S10, serine carboxypeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.29 (0.0346) R2 : 0.643
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.16 (0.0822) R2dC : 0.535 R2C : 0.485
β3 : -1.45 (0.114) R2dE : 0.149 R2E : 0.0139
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.685 (0.0775) R2dN8 : 0.0901 R2N8 : -0.00312
σ : 0.636
deviance : 186.74
__
_____
C
peak time of C : 1.74
E
wheather : radiation
threshold : 10.01
memory length : 1443
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.6 0.631 8.24 0.408 2.13 -1.53 0.705 1.54 0.803 1.66 10 1442 -- --
184.86 0.633 8.26 0.284 2.14 -1.53 0.709 -- 0.794 1.62 10.03 1443 -- --
182.56 0.629 8.24 0.416 2.12 -1.51 -- 1.64 0.801 1.66 10.01 1440 -- --
186.39 0.636 8.27 0.139 2.16 -1.52 -- -- 0.717 1.71 10.03 1443 -- --
264.36 0.757 8.26 0.465 -- -1.95 -- 1.87 0.545 -- 10 262 -- --
247.92 0.738 8.38 -0.316 2.08 -- 0.436 -- 0.258 1.68 -- -- -- --
248.64 0.738 8.38 -0.33 2.08 -- -- -- 0.255 1.72 -- -- -- --
245.5 0.73 8.33 -0.0128 -- -1.91 -- -- 0.431 -- 10 230 -- --
186.74 0.636 8.29 -- 2.16 -1.45 -- -- 0.685 1.74 10.01 1443 -- --
512.93 1.06 8.35 -0.246 -- -- -- -- 0.302 -- -- -- -- --
251.52 0.742 8.37 -- 2.08 -- -- -- 0.292 1.72 -- -- -- --
226.12 0.7 8.33 -- -- -1.8 -- -- 0.355 -- 2.33 231 -- --
514.52 1.06 8.35 -- -- -- -- -- 0.329 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 171.92 radiation 10 1440 > th dose independent rect. 11 20
2 173.08 radiation 10 1440 > th dose independent rect. 11 7
15 173.48 radiation 10 1440 < th dose dependent rect. 10 8
20 174.45 radiation 10 1440 < th dose dependent rect. 10 14
22 174.48 radiation 10 1440 < th dose dependent rect. 10 12
25 174.50 radiation 10 1440 < th dose dependent rect. 10 17
91 175.81 humidity 50 720 > th dose dependent rect. 15 16
94 175.88 radiation 10 1440 > th dose independent sin 20 NA
102 176.46 humidity 50 720 > th dose dependent sin 15 NA
103 176.49 radiation 10 1440 < th dose dependent sin 19 NA
154 177.10 humidity 50 720 > th dose dependent rect. 11 19
169 177.46 radiation 10 1440 > th dose independent rect. 11 3
205 178.28 humidity 50 720 > th dose dependent rect. 15 8
265 180.31 humidity 50 1440 > th dose dependent rect. 15 1
291 180.48 radiation 10 1440 > th dose independent rect. 17 23
309 180.60 radiation 10 1440 > th dose independent no NA NA
405 181.24 humidity 90 1440 < th dose dependent rect. 15 1
415 181.28 humidity 50 720 > th dose dependent rect. 15 21
425 181.60 humidity 50 1440 > th dose dependent rect. 12 4
516 182.78 humidity 90 1440 < th dose dependent rect. 13 3
519 182.87 humidity 80 1440 < th dose dependent rect. 13 19
656 184.49 humidity 80 1440 < th dose dependent rect. 13 8
659 184.54 humidity 50 720 > th dose dependent rect. 24 23
688 184.80 humidity 50 720 > th dose dependent rect. 11 12
813 185.70 humidity 80 1440 < th dose dependent sin 16 NA
833 185.83 humidity 50 720 > th dose dependent no NA NA
836 185.84 humidity 80 720 < th dose dependent sin 13 NA
884 186.27 humidity 70 1440 > th dose independent rect. 12 20
982 187.00 humidity 80 1440 < th dose independent rect. 6 10
986 187.01 radiation 1 1440 > th dose dependent rect. 13 3
1000 187.09 humidity 70 1440 > th dose independent rect. 12 12