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Os01g0628700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome P450 72A1 (EC 1.3.3.9) (CYPLXXII) (Secologanin synthase) (SLS).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.036) R2 : 0.682
β1 : 1.27 (0.131) R2dD : 0.0682 R2D : 0.0088
β2 : 4.16 (0.151) R2dC : 1.59 R2C : 0.0966
β3 : 2.43 (0.158) R2dE : 0.511 R2E : -0.999
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.71 (0.0791) R2dN8 : 0.0803 R2N8 : -0.0287
σ : 0.666
deviance : 204.45
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_____
C
peak time of C : 14.5
E
wheather : temperature
threshold : 25.8
memory length : 518
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21
open length of G : 3.74

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
205.99 0.674 11.2 1.7 3.62 1.86 -1.85 -2.64 0.821 14.1 25.71 596 19.8 3.73
209.65 0.674 11.3 1.33 3.69 1.88 0.651 -- 0.746 14.2 25.72 566 20.4 3.45
197.9 0.655 11.2 1.28 4.09 2.41 -- -1.19 0.768 14.5 25.73 535 20.7 3.97
204.45 0.666 11.3 1.27 4.16 2.43 -- -- 0.71 14.5 25.8 518 21 3.74
537.67 1.09 11.4 0.986 -- -1.14 -- -0.0921 0.313 -- 41.94 21470 22.6 2.73
302.67 0.816 11.4 1.06 2.25 -- 1.24 -- 0.351 14.1 -- -- -- --
308.44 0.822 11.4 1.09 2.25 -- -- -- 0.358 14 -- -- -- --
518.23 1.06 11.4 0.97 -- -1.16 -- -- 0.252 -- 39.45 23026 21.1 4.12
244.87 0.729 11.3 -- 4.27 2.73 -- -- 0.69 14.6 25.72 510 20.2 5.35
612.82 1.16 11.4 1 -- -- -- -- 0.305 -- -- -- -- --
340 0.863 11.4 -- 2.23 -- -- -- 0.236 14 -- -- -- --
401.95 0.934 11.4 -- -- 2.09 -- -- 0.123 -- 27.53 1271 21.2 8.22
639.23 1.18 11.4 -- -- -- -- -- 0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 230.07 temperature 30.0 270 < th dose dependent rect. 21 9
3 236.35 temperature 30.0 90 < th dose dependent rect. 23 8
4 236.49 radiation 1.0 43200 < th dose dependent rect. 19 5
9 238.27 temperature 25.0 720 < th dose independent rect. 19 4
11 238.54 temperature 25.0 90 > th dose independent rect. 18 9
15 239.49 temperature 25.0 720 > th dose dependent rect. 18 5
16 239.50 temperature 25.0 270 > th dose independent rect. 16 16
23 240.94 temperature 25.0 720 > th dose independent rect. 16 7
26 241.15 temperature 25.0 720 > th dose independent rect. 17 5
38 241.68 temperature 20.0 270 > th dose dependent rect. 17 15
39 241.74 temperature 25.0 90 > th dose independent rect. 18 12
53 242.43 radiation 10.0 43200 < th dose dependent rect. 19 7
74 243.30 temperature 10.0 270 > th dose dependent rect. 17 17
127 246.45 temperature 10.0 270 > th dose dependent rect. 16 7
128 246.53 temperature 25.0 270 < th dose independent rect. 20 9
160 247.38 humidity 90.0 720 > th dose dependent rect. 19 4
233 249.52 temperature 25.0 720 > th dose dependent sin 13 NA
234 249.52 temperature 15.0 30 > th dose dependent rect. 18 7
246 249.78 radiation 10.0 43200 < th dose dependent rect. 19 9
268 250.24 temperature 25.0 270 > th dose independent sin 13 NA
293 250.69 temperature 15.0 30 > th dose dependent rect. 18 18
328 251.18 humidity 90.0 270 < th dose independent rect. 16 7
335 251.28 radiation 10.0 270 < th dose dependent rect. 21 10
361 251.80 temperature 10.0 30 > th dose dependent sin 9 NA
364 251.81 wind 1.0 10 > th dose independent rect. 1 17
385 252.26 temperature 25.0 720 > th dose independent sin 16 NA
398 252.61 temperature 30.0 720 < th dose dependent rect. 19 3
415 252.91 precipitation 0.1 720 < th dose independent rect. 15 14
417 252.91 precipitation 0.1 720 < th dose dependent rect. 15 14
420 252.97 temperature 20.0 90 > th dose dependent sin 10 NA
426 253.07 wind 7.0 90 < th dose independent rect. 17 6
444 253.41 precipitation 0.1 270 < th dose independent rect. 16 18
446 253.41 precipitation 0.1 270 < th dose dependent rect. 16 18
452 253.47 precipitation 0.1 270 < th dose independent rect. 6 15
454 253.47 precipitation 0.1 270 < th dose dependent rect. 6 15
465 253.59 radiation 1.0 270 < th dose independent rect. 21 11
466 253.60 humidity 90.0 720 > th dose independent rect. 18 5
470 253.61 humidity 90.0 720 > th dose dependent rect. 9 15
472 253.63 radiation 20.0 90 < th dose dependent rect. 17 6
480 253.74 atmosphere 995.0 90 > th dose independent rect. 23 18
491 253.85 temperature 25.0 720 < th dose independent sin 15 NA
514 254.07 temperature 25.0 90 < th dose independent sin 10 NA
518 254.12 precipitation 0.1 270 < th dose independent rect. 16 5
520 254.12 precipitation 0.1 270 < th dose dependent rect. 16 5
540 254.31 temperature 20.0 30 > th dose independent rect. 18 18
541 254.31 temperature 30.0 90 < th dose dependent sin 9 NA
550 254.40 humidity 50.0 90 > th dose independent rect. 17 6
570 254.59 wind 9.0 90 < th dose dependent rect. 17 6
576 254.69 atmosphere 995.0 270 > th dose independent rect. 21 20
580 254.75 wind 1.0 90 > th dose independent rect. 17 6
584 254.77 wind 9.0 90 < th dose independent rect. 23 18
599 254.91 radiation 1.0 720 > th dose independent rect. 17 2
609 254.93 temperature 10.0 90 > th dose independent rect. 17 6
610 254.93 radiation 20.0 90 < th dose independent rect. 17 6
613 254.93 temperature 10.0 90 > th dose independent rect. 23 18
617 254.97 humidity 90.0 270 < th dose independent rect. 17 4
639 255.19 atmosphere 1015.0 90 < th dose independent rect. 17 6
656 255.35 precipitation 0.1 270 < th dose independent rect. 15 20
658 255.35 precipitation 0.1 270 < th dose dependent rect. 15 20
665 255.41 atmosphere 1015.0 270 < th dose independent rect. 6 15
691 255.60 radiation 1.0 270 < th dose independent rect. 21 16
704 255.78 humidity 50.0 720 > th dose dependent rect. 18 6
717 255.93 atmosphere 995.0 90 > th dose independent rect. 17 6
742 256.07 temperature 10.0 270 > th dose independent rect. 21 9
744 256.07 humidity 50.0 270 > th dose independent rect. 21 9
747 256.07 atmosphere 995.0 270 > th dose independent rect. 21 9
748 256.07 radiation 20.0 270 < th dose independent rect. 21 9
751 256.07 temperature 10.0 270 > th dose independent rect. 6 15
774 256.31 temperature 10.0 270 > th dose independent rect. 21 19
806 256.55 humidity 80.0 720 < th dose independent rect. 17 2
815 256.59 precipitation 0.1 720 < th dose independent rect. 7 22
817 256.59 precipitation 0.1 720 < th dose dependent rect. 7 22
823 256.66 humidity 60.0 90 > th dose independent rect. 12 5
825 256.67 wind 9.0 270 < th dose independent rect. 21 9
831 256.70 wind 9.0 270 < th dose independent rect. 21 19
851 256.89 atmosphere 995.0 30 > th dose dependent rect. 12 6
909 257.37 temperature 25.0 720 < th dose independent rect. 15 15
929 257.47 humidity 70.0 720 > th dose independent rect. 18 15
934 257.50 humidity 50.0 270 > th dose independent rect. 22 18
952 257.63 precipitation 0.1 90 < th dose independent rect. 23 18
953 257.63 precipitation 0.1 90 < th dose dependent rect. 23 18
970 257.74 wind 9.0 270 < th dose independent rect. 6 15
983 257.82 radiation 1.0 270 < th dose dependent rect. 21 16
990 257.86 radiation 30.0 90 < th dose dependent rect. 23 10