FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0628000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.034) R2 : 0.00187
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0663 (0.0717) R2dN8 : 0.00242 R2N8 : 0.00187
σ : 0.641
deviance : 188.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
159.4 0.593 3.25 0.938 0.119 -1.28 -1.16 2.34 0.26 21.7 10.13 703 -- --
162.92 0.594 3.3 0.542 0.113 -1.24 -0.72 -- 0.149 22.1 13.93 779 -- --
162.61 0.594 3.26 0.858 0.217 -1.47 -- 2.37 0.258 17.4 14.4 473 -- --
163.67 0.596 3.29 0.573 0.284 -1.38 -- -- 0.169 17.4 8.227 510 -- --
164.43 0.597 3.27 0.778 -- -1.19 -- 1.35 0.2 -- 13 669 -- --
183.04 0.634 3.33 0.222 0.144 -- 0.828 -- -0.0399 10.1 -- -- -- --
185.73 0.638 3.33 0.254 0.143 -- -- -- -0.0386 9.54 -- -- -- --
165.75 0.6 3.3 0.555 -- -1.15 -- -- 0.142 -- 1.656 814 -- --
171.31 0.61 3.32 -- 0.221 -1.13 -- -- 0.0716 16.8 -3.241 482 -- --
186.94 0.639 3.34 0.253 -- -- -- -- -0.0382 -- -- -- -- --
187.44 0.64 3.34 -- 0.143 -- -- -- -0.0669 9.4 -- -- -- --
172.78 0.612 3.32 -- -- -0.963 -- -- 0.0516 -- 5.924 667 -- --
188.63 0.641 3.34 -- -- -- -- -- -0.0663 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.65 wind 9 43200 > th dose dependent rect. 13 20
4 148.53 humidity 90 14400 > th dose dependent rect. 22 1
6 148.77 wind 9 43200 > th dose dependent rect. 18 14
8 148.81 wind 9 43200 > th dose dependent rect. 9 22
14 148.95 wind 9 43200 > th dose dependent rect. 17 23
15 148.97 wind 9 43200 > th dose dependent rect. 9 12
16 148.98 wind 9 43200 > th dose dependent sin 19 NA
24 149.11 wind 9 43200 > th dose dependent rect. 9 14
26 149.13 wind 9 43200 > th dose dependent rect. 9 16
30 149.18 wind 9 43200 > th dose dependent rect. 3 18
35 149.20 wind 9 43200 > th dose dependent rect. 24 21
40 149.25 wind 9 43200 > th dose dependent rect. 22 23
42 149.29 wind 9 43200 > th dose independent rect. 13 22
54 149.41 wind 9 43200 > th dose dependent sin 12 NA
60 149.45 wind 9 43200 > th dose dependent rect. 20 1
70 149.50 wind 9 43200 > th dose dependent no NA NA
89 149.62 wind 9 43200 > th dose dependent rect. 20 23
97 149.71 wind 9 43200 < th dose independent rect. 13 22
107 149.76 wind 9 43200 > th dose independent rect. 18 20
145 150.51 wind 9 43200 > th dose independent rect. 18 15
185 150.97 wind 9 43200 > th dose independent rect. 23 22
189 151.02 wind 9 43200 > th dose independent rect. 17 17
194 151.11 wind 9 43200 < th dose independent rect. 18 20
196 151.12 wind 9 43200 < th dose independent rect. 17 22
200 151.19 wind 9 43200 > th dose independent rect. 4 17
222 151.44 wind 9 43200 < th dose independent rect. 18 15
223 151.44 wind 9 43200 > th dose independent rect. 5 20
243 151.55 wind 9 43200 > th dose independent no NA NA
252 151.59 wind 9 43200 > th dose dependent rect. 9 6
267 151.71 wind 9 43200 > th dose independent rect. 20 23
278 151.79 wind 9 43200 < th dose independent rect. 23 22
303 151.95 wind 9 43200 < th dose independent rect. 4 17
319 152.03 wind 9 43200 > th dose independent sin 11 NA
329 152.06 humidity 90 14400 < th dose independent rect. 21 1
336 152.12 humidity 60 14400 < th dose independent rect. 17 16
343 152.16 humidity 90 14400 > th dose independent rect. 21 2
360 152.30 wind 9 43200 < th dose independent rect. 4 20
397 152.46 wind 9 43200 < th dose independent rect. 20 23
400 152.48 wind 9 43200 < th dose independent no NA NA
419 152.57 wind 9 43200 > th dose independent sin 2 NA
422 152.58 wind 9 43200 < th dose independent rect. 20 19
436 152.67 wind 9 43200 > th dose independent rect. 23 16
477 152.80 wind 9 43200 > th dose independent rect. 5 10
515 152.94 humidity 60 14400 > th dose independent rect. 17 16
521 152.97 wind 9 43200 < th dose independent rect. 4 11
529 152.98 wind 9 43200 < th dose independent sin 3 NA
545 153.01 wind 9 43200 < th dose independent rect. 23 16
628 153.25 atmosphere 995 43200 < th dose independent rect. 15 1
700 153.48 atmosphere 995 43200 > th dose independent rect. 15 1
734 153.58 atmosphere 995 43200 < th dose dependent rect. 15 2
739 153.59 wind 9 43200 > th dose dependent rect. 17 7
743 153.60 wind 9 43200 < th dose independent sin 12 NA
784 153.74 wind 7 43200 < th dose independent rect. 6 1
801 153.85 wind 9 43200 > th dose independent rect. 20 1
854 154.04 atmosphere 995 43200 > th dose independent rect. 14 3
888 154.21 wind 7 43200 > th dose independent rect. 6 1
895 154.26 humidity 90 14400 < th dose independent rect. 18 5
902 154.29 atmosphere 995 43200 < th dose independent rect. 14 3
905 154.30 humidity 90 14400 < th dose independent rect. 18 1
919 154.46 wind 9 43200 < th dose independent rect. 20 1
924 154.51 humidity 60 14400 < th dose independent rect. 17 1
925 154.51 atmosphere 995 43200 > th dose independent rect. 14 7
946 154.66 atmosphere 995 43200 > th dose independent rect. 13 9
951 154.73 wind 9 43200 > th dose independent rect. 18 6
952 154.74 humidity 60 14400 > th dose independent rect. 17 11
961 154.77 humidity 60 14400 > th dose independent rect. 17 3
992 155.00 humidity 50 14400 < th dose independent sin 11 NA
994 155.00 wind 9 43200 > th dose dependent rect. 17 4
995 155.00 humidity 60 14400 < th dose dependent rect. 16 18
999 155.04 humidity 60 14400 > th dose independent rect. 17 1