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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0627900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome P450 monooxygenase CYP72A5 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.0407) R2 : 0.625
β1 : 3.99 (0.159) R2dD : 0.638 R2D : 0.304
β2 : 1.09 (0.103) R2dC : 0.0916 R2C : 0.0605
β3 : -1.82 (0.133) R2dE : 0.198 R2E : -0.116
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.888 (0.0921) R2dN8 : 0.119 R2N8 : -0.0839
σ : 0.747
deviance : 257.11
__
_____
C
peak time of C : 19.4
E
wheather : temperature
threshold : 24.7
memory length : 5689
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.2 0.727 4.12 4.66 1.17 -2.02 2.3 2.11 1 19.5 24.84 5201 -- --
244.13 0.728 4.15 4.18 1.11 -1.86 2.04 -- 0.964 19.2 24.6 5690 -- --
253.83 0.742 4.12 4.65 1.18 -2.02 -- 2.32 1.01 19.5 24.81 5180 -- --
257.11 0.747 4.18 3.99 1.09 -1.82 -- -- 0.888 19.4 24.7 5689 -- --
317.79 0.83 4.08 4.57 -- -1.92 -- 1.67 1.04 -- 24.7 5736 -- --
347.8 0.874 4.29 3.21 1.1 -- 2.33 -- 0.407 19 -- -- -- --
361.92 0.891 4.29 3.16 1.11 -- -- -- 0.413 18.9 -- -- -- --
318.47 0.831 4.11 4.05 -- -1.72 -- -- 1.06 -- 23.21 5682 -- --
599.67 1.14 4.41 -- 1.08 -0.85 -- -- -0.0824 19.3 34.8 1452 -- --
426.21 0.965 4.27 3.14 -- -- -- -- 0.393 -- -- -- -- --
625.47 1.17 4.37 -- 1.07 -- -- -- 0.0612 19.1 -- -- -- --
659.68 1.2 4.38 -- -- -0.81 -- -- -0.0902 -- 34.5 1412 -- --
686.12 1.22 4.35 -- -- -- -- -- 0.0443 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 231.66 humidity 90.0 43200 < th dose independent rect. 20 1
2 232.48 humidity 90.0 43200 < th dose independent rect. 19 3
3 232.70 humidity 90.0 43200 > th dose dependent rect. 21 1
8 233.51 radiation 10.0 14400 < th dose independent rect. 16 14
11 233.85 humidity 90.0 43200 > th dose dependent rect. 19 3
12 233.87 radiation 1.0 14400 < th dose independent rect. 17 1
23 234.94 humidity 80.0 43200 > th dose dependent rect. 17 1
25 235.10 humidity 90.0 43200 > th dose independent rect. 9 1
28 235.32 humidity 60.0 43200 > th dose independent rect. 15 1
29 235.54 humidity 90.0 43200 > th dose independent rect. 20 2
31 235.68 radiation 1.0 43200 < th dose dependent rect. 19 5
32 235.71 wind 9.0 43200 > th dose dependent rect. 19 11
38 236.02 precipitation 0.1 43200 > th dose independent rect. 17 2
40 236.10 precipitation 0.1 43200 > th dose dependent rect. 14 5
45 236.22 precipitation 0.1 43200 < th dose independent rect. 17 2
46 236.22 precipitation 0.1 43200 < th dose dependent rect. 17 2
48 236.28 radiation 1.0 14400 > th dose independent rect. 17 1
51 236.38 radiation 10.0 14400 < th dose independent rect. 14 16
54 236.50 temperature 20.0 43200 > th dose independent rect. 19 1
59 236.61 humidity 90.0 43200 > th dose independent rect. 17 5
65 236.71 radiation 1.0 14400 < th dose independent rect. 17 5
71 236.74 precipitation 0.1 43200 > th dose independent rect. 14 4
75 236.80 precipitation 0.1 43200 < th dose independent rect. 14 4
76 236.80 precipitation 0.1 43200 < th dose dependent rect. 14 4
92 237.14 radiation 1.0 14400 > th dose independent rect. 17 13
113 237.41 humidity 90.0 43200 < th dose independent rect. 8 15
128 237.66 wind 9.0 43200 > th dose independent rect. 19 11
134 237.70 humidity 90.0 43200 < th dose independent rect. 9 1
140 237.81 humidity 60.0 43200 < th dose independent rect. 15 1
146 237.92 humidity 70.0 14400 > th dose independent rect. 19 2
158 238.00 wind 5.0 43200 < th dose independent rect. 5 2
171 238.19 humidity 90.0 43200 > th dose dependent rect. 9 1
176 238.31 radiation 1.0 14400 < th dose independent rect. 17 17
185 238.41 wind 9.0 43200 > th dose dependent rect. 19 4
188 238.46 radiation 10.0 14400 < th dose independent sin 14 NA
197 238.55 humidity 70.0 14400 < th dose independent rect. 19 2
198 238.56 humidity 70.0 14400 > th dose independent rect. 19 11
204 238.65 humidity 70.0 14400 < th dose independent rect. 19 12
212 238.76 wind 9.0 43200 < th dose independent rect. 19 11
234 238.84 humidity 90.0 43200 > th dose independent rect. 8 15
238 238.86 radiation 30.0 14400 > th dose independent rect. 7 1
276 239.10 wind 5.0 43200 > th dose independent rect. 5 2
277 239.10 humidity 90.0 43200 > th dose dependent rect. 8 15
278 239.13 wind 5.0 43200 < th dose independent rect. 5 8
285 239.29 temperature 20.0 720 > th dose dependent rect. 3 19
291 239.36 radiation 1.0 14400 > th dose independent rect. 17 17
294 239.39 wind 5.0 43200 > th dose independent rect. 5 9
297 239.43 radiation 10.0 14400 < th dose independent rect. 14 5
302 239.45 radiation 10.0 14400 < th dose independent rect. 14 13
306 239.46 radiation 10.0 14400 < th dose independent rect. 14 11
324 239.64 humidity 90.0 43200 > th dose independent rect. 11 12
334 239.72 wind 9.0 43200 > th dose dependent rect. 19 6
342 239.80 humidity 90.0 43200 < th dose independent sin 19 NA
352 239.88 radiation 1.0 14400 > th dose dependent rect. 18 12
355 239.92 wind 9.0 43200 > th dose independent rect. 19 6
375 240.07 wind 5.0 43200 > th dose independent rect. 9 3
378 240.09 temperature 30.0 14400 < th dose dependent rect. 21 1
389 240.16 temperature 10.0 14400 > th dose dependent rect. 21 1
412 240.22 radiation 30.0 14400 < th dose independent rect. 15 17
426 240.27 wind 5.0 43200 < th dose independent rect. 9 3
427 240.27 wind 9.0 43200 < th dose independent rect. 19 6
452 240.42 temperature 20.0 43200 < th dose independent rect. 19 1
460 240.46 temperature 25.0 43200 < th dose dependent rect. 17 1
467 240.52 temperature 20.0 720 > th dose dependent rect. 21 22
470 240.54 radiation 1.0 14400 < th dose independent rect. 7 23
474 240.57 temperature 10.0 14400 > th dose dependent rect. 15 11
488 240.63 wind 5.0 43200 < th dose independent sin 4 NA
514 240.70 temperature 10.0 14400 > th dose dependent rect. 17 6
564 240.87 temperature 30.0 14400 < th dose dependent rect. 18 5
571 240.88 temperature 30.0 14400 < th dose dependent rect. 17 9
586 240.93 wind 5.0 43200 > th dose independent sin 4 NA
587 240.93 temperature 20.0 14400 > th dose dependent rect. 17 1
589 240.93 radiation 1.0 14400 > th dose dependent rect. 4 2
616 240.97 temperature 10.0 14400 > th dose dependent sin 15 NA
630 241.01 precipitation 0.1 43200 > th dose dependent rect. 14 8
655 241.10 radiation 1.0 14400 > th dose independent sin 12 NA
670 241.13 temperature 10.0 14400 > th dose dependent rect. 17 2
773 241.39 wind 5.0 43200 < th dose independent rect. 20 20
774 241.39 wind 5.0 43200 > th dose independent rect. 19 21
788 241.41 wind 3.0 43200 > th dose dependent rect. 5 8
790 241.42 radiation 1.0 14400 < th dose independent rect. 5 1
825 241.47 humidity 80.0 43200 > th dose independent rect. 16 1
836 241.50 radiation 1.0 14400 > th dose independent rect. 5 1
871 241.57 radiation 1.0 14400 > th dose independent rect. 7 23
885 241.60 temperature 25.0 4320 < th dose independent rect. 1 17
912 241.65 wind 9.0 43200 < th dose independent rect. 19 2
925 241.67 temperature 20.0 1440 > th dose dependent rect. 11 8
947 241.72 humidity 90.0 43200 > th dose independent sin 20 NA
959 241.74 humidity 80.0 14400 > th dose dependent rect. 18 9
971 241.76 temperature 25.0 4320 > th dose independent rect. 1 17
980 241.79 radiation 30.0 14400 < th dose independent rect. 7 1
994 241.82 temperature 20.0 43200 > th dose independent rect. 14 8