Os01g0626400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-binding protein WRKY2-like (WRKY transcription factor 11) (WRKY16).
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Os01g0626400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-binding protein WRKY2-like (WRKY transcription factor 11) (WRKY16).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.09 | 0.385 | 8.45 | 0.359 | 0.0163 | 2.51 | 0.299 | 4.45 | 0.614 | 0.376 | 20.01 | 4634 | -- | -- |
| 71.74 | 0.394 | 8.33 | 0.421 | 0.0217 | 0.791 | 0.294 | -- | 0.688 | 0.656 | 24.94 | 4342 | -- | -- |
| 67.37 | 0.382 | 8.45 | 0.351 | 0.0398 | 2.5 | -- | 4.39 | 0.608 | 20 | 19.93 | 4708 | -- | -- |
| 72.01 | 0.395 | 8.33 | 0.394 | 0.0759 | 0.786 | -- | -- | 0.669 | 22.2 | 80.89 | 6557 | -- | -- |
| 67 | 0.381 | 8.52 | 0.497 | -- | 4.23 | -- | 8.03 | 0.604 | -- | 19.07 | 5534 | -- | -- |
| 81.68 | 0.424 | 8.37 | 0.0235 | 0.00833 | -- | -0.302 | -- | 0.483 | 13.8 | -- | -- | -- | -- |
| 81.91 | 0.424 | 8.38 | 0.0146 | 0.0487 | -- | -- | -- | 0.482 | 18.8 | -- | -- | -- | -- |
| 71.96 | 0.395 | 8.34 | 0.365 | -- | 0.754 | -- | -- | 0.629 | -- | 95.64 | 4594 | -- | -- |
| 73.63 | 0.4 | 8.36 | -- | 0.093 | 0.596 | -- | -- | 0.577 | 22.2 | 103.3 | 2427 | -- | -- |
| 82.04 | 0.423 | 8.37 | 0.0136 | -- | -- | -- | -- | 0.481 | -- | -- | -- | -- | -- |
| 81.92 | 0.423 | 8.38 | -- | 0.0485 | -- | -- | -- | 0.481 | 18.9 | -- | -- | -- | -- |
| 74.04 | 0.401 | 8.35 | -- | -- | 0.567 | -- | -- | 0.572 | -- | 114.3 | 2600 | -- | -- |
| 82.04 | 0.423 | 8.37 | -- | -- | -- | -- | -- | 0.48 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.84 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 2 | 60.98 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 4 | 61.46 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 5 | 61.50 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 8 | 61.55 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 11 | 61.58 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 13 | 61.58 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 8 |
| 15 | 61.59 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 9 |
| 28 | 61.71 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 35 | 61.72 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 36 | 61.73 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 40 | 61.73 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 49 | 61.76 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 82 | 61.89 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 106 | 61.97 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 113 | 62.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 114 | 62.00 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 118 | 62.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 119 | 62.00 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 122 | 62.02 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 125 | 62.02 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 137 | 62.06 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 141 | 62.07 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 146 | 62.08 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 169 | 62.13 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 170 | 62.14 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 186 | 62.18 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 233 | 62.32 | humidity | 90.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 236 | 62.32 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 258 | 62.36 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 284 | 62.41 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 286 | 62.41 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 288 | 62.41 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 300 | 62.44 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 24 | 2 |
| 308 | 62.46 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 324 | 62.49 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 20 |
| 332 | 62.50 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 20 |
| 335 | 62.51 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 350 | 62.52 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 358 | 62.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 20 |
| 372 | 62.55 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 374 | 62.55 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 3 |
| 392 | 62.56 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 2 |
| 432 | 62.64 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 458 | 62.65 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 13 | 11 |
| 462 | 62.66 | humidity | 90.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 465 | 62.66 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 13 |
| 483 | 62.68 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 6 |
| 527 | 62.72 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 533 | 62.72 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 572 | 62.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 22 | 5 |
| 597 | 62.79 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 608 | 62.80 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 626 | 62.81 | humidity | 80.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 633 | 62.81 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 670 | 62.85 | wind | 1.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 683 | 62.86 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 7 |
| 684 | 62.86 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 7 |
| 690 | 62.86 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 746 | 62.92 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 792 | 62.96 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 800 | 62.97 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 12 | 13 |
| 820 | 63.00 | humidity | 80.0 | 43200 | > th | dose independent | sin | 17 | NA |
| 823 | 63.00 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 883 | 63.05 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 884 | 63.05 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 891 | 63.05 | radiation | 10.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 945 | 63.09 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 20 |
| 952 | 63.10 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 998 | 63.15 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 16 | 22 |