Os01g0624700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 12.
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Os01g0624700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 12.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 239.21 | 0.727 | 6.63 | -3.51 | 1.18 | 3.47 | 0.0297 | 6.66 | -0.941 | 23.8 | 0.85 | 4373 | -- | -- |
| 250.52 | 0.737 | 6.5 | -2.49 | 1.13 | 3.03 | 1 | -- | -0.738 | 23.5 | 2.019 | 2940 | -- | -- |
| 238.79 | 0.72 | 6.63 | -3.52 | 1.15 | 3.52 | -- | 6.77 | -0.949 | 23.7 | 0.7536 | 4380 | -- | -- |
| 249.09 | 0.735 | 6.45 | -2.52 | 1.09 | 3.17 | -- | -- | -0.651 | 23.6 | 2.122 | 2941 | -- | -- |
| 278.33 | 0.777 | 6.52 | -3.4 | -- | 4.64 | -- | 6.86 | -0.746 | -- | 0.833 | 3022 | -- | -- |
| 361.62 | 0.891 | 6.58 | -3.09 | 1.36 | -- | 0.307 | -- | -1.2 | 23.7 | -- | -- | -- | -- |
| 362.03 | 0.891 | 6.58 | -3.1 | 1.36 | -- | -- | -- | -1.2 | 23.7 | -- | -- | -- | -- |
| 282.66 | 0.783 | 6.42 | -2.45 | -- | 4.01 | -- | -- | -0.581 | -- | 2.255 | 3053 | -- | -- |
| 254.03 | 0.742 | 6.32 | -- | 0.996 | 2.98 | -- | -- | -0.207 | 0.0417 | 0.003044 | 44904 | -- | -- |
| 478.93 | 1.02 | 6.55 | -3.06 | -- | -- | -- | -- | -1.18 | -- | -- | -- | -- | -- |
| 615.93 | 1.16 | 6.5 | -- | 1.33 | -- | -- | -- | -0.852 | 23.6 | -- | -- | -- | -- |
| 350.76 | 0.872 | 6.29 | -- | -- | 3.15 | -- | -- | -0.00931 | -- | 0.2549 | 43574 | -- | -- |
| 726.65 | 1.26 | 6.47 | -- | -- | -- | -- | -- | -0.842 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 229.28 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 2 | 230.11 | humidity | 80 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 3 | 230.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 6 | 231.15 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 7 | 231.51 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 11 | 231.77 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 23 | 232.18 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 25 | 232.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 26 | 232.44 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 27 | 232.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 34 | 233.01 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 48 | 233.20 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 56 | 233.63 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 57 | 233.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 62 | 233.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 75 | 234.04 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 77 | 234.07 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 99 | 234.96 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 109 | 235.27 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 134 | 235.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 141 | 235.94 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 148 | 236.09 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 178 | 236.42 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 187 | 236.56 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 18 |
| 188 | 236.59 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 191 | 236.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 196 | 236.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 204 | 236.69 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 205 | 236.69 | radiation | 1 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 226 | 236.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 20 |
| 229 | 236.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 15 | 21 |
| 230 | 236.94 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 23 |
| 232 | 236.95 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 238 | 236.96 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 240 | 236.97 | humidity | 90 | 43200 | > th | dose dependent | rect. | 8 | 22 |
| 242 | 236.99 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 310 | 237.18 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 312 | 237.19 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 322 | 237.23 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 402 | 237.50 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 22 |
| 438 | 237.65 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 456 | 237.73 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 527 | 238.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 533 | 238.06 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 547 | 238.14 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 548 | 238.14 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 549 | 238.16 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 557 | 238.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 611 | 238.33 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 673 | 238.53 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 683 | 238.58 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 14 |
| 740 | 238.80 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 744 | 238.81 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 803 | 239.05 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 15 |
| 855 | 239.27 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 2 |
| 859 | 239.29 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 874 | 239.35 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 19 |
| 887 | 239.39 | humidity | 90 | 43200 | < th | dose independent | rect. | 7 | 21 |
| 912 | 239.46 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 21 |
| 920 | 239.49 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 928 | 239.54 | humidity | 90 | 43200 | > th | dose independent | sin | 6 | NA |
| 986 | 239.76 | temperature | 25 | 4320 | > th | dose dependent | sin | 4 | NA |