Os01g0624400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Late embryogenesis abundant protein 2 family protein.
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Os01g0624400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Late embryogenesis abundant protein 2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.05 | 0.37 | 10.8 | 0.039 | 0.866 | -0.775 | -0.302 | 1.41 | -0.22 | 21.1 | 25 | 12 | -- | -- |
| 62.77 | 0.369 | 10.8 | -0.124 | 0.869 | -0.646 | -0.373 | -- | -0.253 | 21.1 | 24.53 | 12 | -- | -- |
| 62.36 | 0.368 | 10.8 | 0.061 | 0.866 | -0.776 | -- | 1.53 | -0.217 | 21.1 | 25 | 12 | -- | -- |
| 63.26 | 0.37 | 10.8 | -0.112 | 0.872 | -0.642 | -- | -- | -0.254 | 21.2 | 24.53 | 12 | -- | -- |
| 104.46 | 0.479 | 10.8 | 0.141 | -- | -0.948 | -- | 2.13 | -0.198 | -- | 25 | 12 | -- | -- |
| 69.34 | 0.39 | 10.9 | -0.225 | 0.924 | -- | -0.251 | -- | -0.321 | 22.2 | -- | -- | -- | -- |
| 69.59 | 0.391 | 10.9 | -0.215 | 0.924 | -- | -- | -- | -0.321 | 22.2 | -- | -- | -- | -- |
| 104.94 | 0.479 | 10.8 | -0.0403 | -- | -0.842 | -- | -- | -0.183 | -- | 20.29 | 14 | -- | -- |
| 63.58 | 0.371 | 10.8 | -- | 0.871 | -0.669 | -- | -- | -0.238 | 21.1 | 24.5 | 12 | -- | -- |
| 121.53 | 0.515 | 10.8 | -0.202 | -- | -- | -- | -- | -0.319 | -- | -- | -- | -- | -- |
| 70.82 | 0.394 | 10.8 | -- | 0.923 | -- | -- | -- | -0.297 | 22.2 | -- | -- | -- | -- |
| 104.93 | 0.477 | 10.8 | -- | -- | -0.85 | -- | -- | -0.177 | -- | 20.2 | 3 | -- | -- |
| 122.6 | 0.517 | 10.8 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.71 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 21 | 15 |
| 3 | 57.74 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 14 | 3 |
| 35 | 57.81 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 19 | 14 |
| 43 | 57.94 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 44 | 57.96 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 49 | 58.03 | humidity | 70.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 55 | 58.17 | radiation | 10.0 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 56 | 58.18 | humidity | 70.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 59 | 58.21 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 73 | 58.39 | humidity | 60.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 76 | 58.40 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 19 | 13 |
| 78 | 58.41 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 20 | 17 |
| 101 | 58.47 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 124 | 58.54 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 24 | 13 |
| 151 | 58.62 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 165 | 58.66 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 183 | 58.69 | humidity | 60.0 | 43200 | > th | dose independent | sin | 8 | NA |
| 184 | 58.69 | radiation | 20.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 203 | 58.69 | radiation | 40.0 | 4320 | < th | dose dependent | rect. | 16 | 11 |
| 229 | 58.72 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 252 | 58.73 | radiation | 1.0 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 262 | 58.73 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 14 | 11 |
| 287 | 58.74 | radiation | 40.0 | 43200 | < th | dose dependent | rect. | 14 | 5 |
| 313 | 58.76 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 15 | 14 |
| 427 | 58.89 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 500 | 59.00 | radiation | 30.0 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 504 | 59.00 | radiation | 20.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 591 | 59.07 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 15 | 12 |
| 610 | 59.08 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 15 | 10 |
| 662 | 59.15 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 666 | 59.16 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 667 | 59.16 | radiation | 10.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 711 | 59.18 | radiation | 30.0 | 43200 | < th | dose dependent | sin | 14 | NA |
| 720 | 59.21 | radiation | 20.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 721 | 59.21 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 740 | 59.23 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 763 | 59.25 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 15 | 19 |
| 768 | 59.26 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 772 | 59.26 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 809 | 59.31 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 17 | NA |
| 811 | 59.31 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 12 | 11 |
| 823 | 59.33 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 857 | 59.38 | radiation | 30.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 861 | 59.38 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 864 | 59.39 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 874 | 59.40 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 898 | 59.45 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 923 | 59.49 | humidity | 60.0 | 43200 | < th | dose dependent | sin | 11 | NA |
| 960 | 59.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 970 | 59.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 997 | 59.55 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 999 | 59.56 | temperature | 15.0 | 14400 | > th | dose independent | rect. | 12 | 15 |