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Os01g0624000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Neutral/alkaline nonlysosomal ceramidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0122) R2 : 0.746
β1 : 1 (0.0449) R2dD : 0.289 R2D : 0.254
β2 : 0.921 (0.0311) R2dC : 0.488 R2C : 0.466
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0914 (0.0262) R2dN8 : 0.00911 R2N8 : -0.0137
σ : 0.23
deviance : 24.19
__
_____
C
peak time of C : 16
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.54 0.208 10.3 0.919 0.541 0.501 -0.494 -0.0649 0.0434 17.4 10 269 -- --
19.53 0.206 10.3 0.921 0.536 0.503 -0.513 -- 0.0436 17.4 10.01 260 -- --
20.11 0.209 10.3 0.919 0.519 0.49 -- -0.145 0.0385 17.2 10 277 -- --
20.22 0.209 10.3 0.92 0.536 0.5 -- -- 0.043 17.4 10.01 259 -- --
23 0.223 10.3 0.993 -- 0.925 -- -0.392 0.0372 -- 4.074 494 -- --
23.94 0.229 10.3 1.01 0.924 -- -0.292 -- 0.0931 16 -- -- -- --
24.19 0.23 10.3 1 0.921 -- -- -- 0.0914 16 -- -- -- --
23.39 0.225 10.3 0.992 -- 0.924 -- -- 0.0357 -- 4.06 492 -- --
42.33 0.303 10.3 -- 0.415 0.718 -- -- -0.0152 18.9 10.01 262 -- --
70.63 0.393 10.3 0.965 -- -- -- -- 0.0668 -- -- -- -- --
50.7 0.333 10.3 -- 0.902 -- -- -- -0.0203 16 -- -- -- --
45.27 0.313 10.3 -- -- 0.957 -- -- -0.117 -- 10.01 399 -- --
95.2 0.455 10.3 -- -- -- -- -- -0.0403 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.82 radiation 10.0 90 < th dose dependent rect. 9 14
2 16.83 radiation 10.0 90 < th dose dependent rect. 11 12
3 16.85 radiation 10.0 90 < th dose dependent rect. 13 10
8 17.02 radiation 10.0 90 < th dose dependent rect. 15 8
16 17.26 radiation 10.0 90 < th dose dependent sin 20 NA
19 17.30 humidity 60.0 90 > th dose independent rect. 17 6
23 17.43 humidity 50.0 270 > th dose independent rect. 15 6
24 17.43 radiation 1.0 90 < th dose independent rect. 9 14
27 17.45 temperature 30.0 90 < th dose independent rect. 17 6
33 17.51 radiation 40.0 270 < th dose dependent rect. 15 6
36 17.54 radiation 20.0 270 < th dose independent rect. 15 6
39 17.58 radiation 1.0 90 < th dose independent rect. 15 8
47 17.65 radiation 1.0 90 > th dose independent sin 21 NA
54 17.68 radiation 1.0 90 < th dose independent sin 21 NA
65 17.72 radiation 40.0 270 < th dose dependent rect. 15 18
67 17.74 wind 7.0 90 < th dose independent rect. 23 18
68 17.75 temperature 15.0 90 > th dose independent rect. 23 18
75 17.79 temperature 10.0 270 > th dose dependent rect. 8 8
77 17.80 radiation 10.0 270 < th dose dependent rect. 8 12
78 17.80 radiation 20.0 270 < th dose dependent rect. 4 16
88 17.84 radiation 40.0 270 < th dose dependent rect. 3 18
110 17.91 humidity 50.0 90 > th dose dependent rect. 17 6
113 17.91 humidity 50.0 270 > th dose dependent rect. 3 17
116 17.92 radiation 20.0 270 < th dose independent rect. 15 18
127 17.96 wind 7.0 270 < th dose independent rect. 21 19
147 18.01 humidity 50.0 90 > th dose dependent rect. 5 18
158 18.04 humidity 90.0 270 < th dose independent rect. 8 8
160 18.04 radiation 40.0 270 < th dose independent rect. 3 18
167 18.05 atmosphere 995.0 90 > th dose independent rect. 17 6
186 18.07 humidity 90.0 270 < th dose dependent rect. 9 6
196 18.09 temperature 10.0 90 > th dose independent rect. 17 6
208 18.10 temperature 15.0 270 > th dose independent rect. 21 19
217 18.11 atmosphere 1015.0 90 < th dose independent rect. 17 6
223 18.12 precipitation 0.1 90 < th dose independent rect. 23 18
224 18.12 precipitation 0.1 90 < th dose dependent rect. 23 18
225 18.13 wind 9.0 90 < th dose independent rect. 17 6
259 18.21 temperature 10.0 270 > th dose independent rect. 15 7
261 18.21 humidity 50.0 270 > th dose independent rect. 16 16
283 18.24 atmosphere 1015.0 270 < th dose independent rect. 15 7
289 18.25 humidity 50.0 10 > th dose dependent rect. 6 17
322 18.31 wind 9.0 270 < th dose independent rect. 15 7
323 18.31 radiation 1.0 270 > th dose independent rect. 8 8
328 18.32 radiation 1.0 270 < th dose independent rect. 8 12
329 18.32 humidity 50.0 270 > th dose independent rect. 4 16
330 18.32 humidity 70.0 270 > th dose independent rect. 3 17
339 18.33 humidity 90.0 90 < th dose dependent rect. 11 7
350 18.34 temperature 10.0 90 > th dose dependent rect. 23 18
353 18.35 temperature 15.0 270 > th dose independent rect. 8 8
354 18.35 radiation 20.0 270 < th dose independent rect. 3 18
361 18.36 atmosphere 995.0 270 > th dose independent rect. 22 17
379 18.38 radiation 40.0 270 < th dose dependent rect. 1 22
381 18.39 wind 7.0 270 < th dose independent rect. 20 21
389 18.40 humidity 70.0 90 > th dose independent rect. 5 18
416 18.44 temperature 30.0 270 < th dose independent rect. 16 4
431 18.45 precipitation 0.1 270 < th dose independent rect. 21 19
437 18.45 precipitation 0.1 270 < th dose dependent rect. 21 19
454 18.48 temperature 15.0 270 > th dose independent rect. 20 21
483 18.52 wind 1.0 270 > th dose independent rect. 16 5
525 18.57 wind 1.0 270 > th dose independent rect. 15 7
549 18.59 temperature 10.0 270 > th dose independent rect. 17 3
550 18.59 atmosphere 1010.0 270 < th dose independent rect. 17 3
567 18.60 wind 9.0 90 < th dose dependent rect. 17 6
589 18.62 wind 9.0 270 < th dose independent rect. 17 3
590 18.62 atmosphere 995.0 270 > th dose independent rect. 15 7
618 18.64 precipitation 0.1 90 < th dose independent rect. 17 6
624 18.64 precipitation 0.1 90 < th dose dependent rect. 17 6
633 18.66 wind 7.0 270 < th dose independent rect. 9 7
635 18.66 atmosphere 995.0 270 > th dose independent rect. 21 19
642 18.67 precipitation 0.1 270 < th dose independent rect. 11 15
647 18.67 precipitation 0.1 270 < th dose dependent rect. 11 15
653 18.68 precipitation 0.1 270 < th dose independent rect. 15 7
661 18.68 precipitation 0.1 270 < th dose dependent rect. 15 7
670 18.69 atmosphere 1015.0 90 < th dose independent rect. 23 18
675 18.70 radiation 40.0 270 < th dose independent rect. 2 9
693 18.72 atmosphere 995.0 270 > th dose independent rect. 17 3
718 18.74 precipitation 0.1 270 < th dose independent rect. 20 21
724 18.74 precipitation 0.1 270 < th dose dependent rect. 20 21
738 18.76 humidity 60.0 270 > th dose independent rect. 2 9
740 18.76 humidity 50.0 270 > th dose dependent rect. 16 4
749 18.77 wind 1.0 270 > th dose independent rect. 17 3
785 18.79 temperature 30.0 270 < th dose independent rect. 3 17
882 18.87 humidity 60.0 10 > th dose independent rect. 17 6
885 18.87 wind 9.0 270 < th dose independent rect. 11 15
906 18.89 radiation 1.0 1440 < th dose dependent rect. 19 5
943 18.92 wind 9.0 270 < th dose dependent rect. 17 3
961 18.94 precipitation 0.1 270 < th dose independent rect. 2 9
970 18.94 precipitation 0.1 270 < th dose dependent rect. 2 9
983 18.95 wind 1.0 270 > th dose independent rect. 21 19