Os01g0622400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0622400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.26 | 0.789 | 4.71 | -0.116 | 0.67 | 1.33 | -0.589 | 0.778 | -0.46 | 11.4 | 22.05 | 1844 | -- | -- |
| 283.61 | 0.784 | 4.68 | 0.132 | 0.659 | 1.32 | -0.582 | -- | -0.402 | 11.4 | 22.09 | 1878 | -- | -- |
| 283.75 | 0.785 | 4.71 | -0.128 | 0.673 | 1.34 | -- | 0.75 | -0.459 | 11.3 | 22.1 | 1844 | -- | -- |
| 285.06 | 0.786 | 4.69 | 0.113 | 0.664 | 1.32 | -- | -- | -0.401 | 11.4 | 22.07 | 1870 | -- | -- |
| 294.62 | 0.799 | 4.73 | 0.11 | -- | 1.49 | -- | 0.281 | -0.431 | -- | 21.8 | 824 | -- | -- |
| 344.52 | 0.87 | 4.78 | -0.403 | 0.7 | -- | -0.637 | -- | -0.836 | 11.3 | -- | -- | -- | -- |
| 346.25 | 0.871 | 4.78 | -0.429 | 0.703 | -- | -- | -- | -0.839 | 11.2 | -- | -- | -- | -- |
| 293.97 | 0.799 | 4.7 | 0.0661 | -- | 1.41 | -- | -- | -0.38 | -- | 21.9 | 828 | -- | -- |
| 285.35 | 0.787 | 4.69 | -- | 0.664 | 1.28 | -- | -- | -0.416 | 11.3 | 22.11 | 1867 | -- | -- |
| 377.17 | 0.907 | 4.8 | -0.446 | -- | -- | -- | -- | -0.846 | -- | -- | -- | -- | -- |
| 351.11 | 0.877 | 4.77 | -- | 0.707 | -- | -- | -- | -0.791 | 11.3 | -- | -- | -- | -- |
| 293.96 | 0.799 | 4.7 | -- | -- | 1.39 | -- | -- | -0.409 | -- | 21.92 | 828 | -- | -- |
| 382.43 | 0.913 | 4.79 | -- | -- | -- | -- | -- | -0.796 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 281.86 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 2 | 282.08 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 3 | 282.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 14 |
| 5 | 282.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 35 | 283.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 43 | 284.05 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 6 |
| 126 | 286.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 137 | 286.58 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 162 | 287.01 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 165 | 287.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 167 | 287.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 171 | 287.18 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 191 | 287.59 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 205 | 287.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 210 | 287.96 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 277 | 288.92 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 282 | 289.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 290 | 289.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 311 | 289.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 348 | 290.04 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 351 | 290.09 | humidity | 60 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 365 | 290.29 | humidity | 60 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 398 | 290.55 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 547 | 291.66 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 548 | 291.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 559 | 291.72 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 591 | 291.90 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 618 | 291.99 | humidity | 60 | 43200 | < th | dose dependent | sin | 5 | NA |
| 646 | 292.07 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 677 | 292.22 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 691 | 292.29 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 695 | 292.32 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 916 | 293.36 | temperature | 25 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 955 | 293.50 | temperature | 25 | 14400 | > th | dose dependent | rect. | 11 | 3 |