Os01g0620900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0620900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.07	(0.0368)	R²	:	0.341
β₁	:	0.41	(0.142)	R²_dD	:	0.0144	R²_D	:	0.00869
β₂	:	1.02	(0.101)	R²_dC	:	0.171	R²_C	:	0.0776
β₃	:	0.509	(0.114)	R²_dE	:	0.0354	R²_E	:	-0.00823
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-4.09	(0.633)	R²_dD*E	:	0.0733	R²_D*E	:	0.0895
γ₁	:	0.509	(0.083)	R²_dN8	:	0.0851	R²_N8	:	0.0967
σ	:	0.672
deviance	:	208.06
__

_____

C
peak time of C	:	17.5
E
wheather	:	temperature
threshold	:	25.11
memory length	:	12
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	4.95
open length of G	:	5.97

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
197.93	0.661	5.08	0.308	1.06	0.565	-2.16	-4.84	0.475	17.8	25	11	4.96	5.98
220.68	0.692	5.04	0.744	0.955	0.438	-1.04	--	0.624	17.5	25.1	25	5.01	6.78
208.06	0.672	5.07	0.41	1.02	0.509	--	-4.09	0.509	17.5	25.11	12	4.95	5.97
224.18	0.697	5.04	0.713	0.995	0.475	--	--	0.662	18	25	21	5	6.9
252.51	0.744	5.03	0.411	--	0.0602	--	-3.81	0.587	--	25.39	3	5.44	6.44
228.69	0.709	5.01	0.775	0.845	--	-1.25	--	0.739	17.1	--	--	--	--
232.62	0.714	5.01	0.774	0.836	--	--	--	0.733	17	--	--	--	--
238.79	0.72	4.96	0.66	--	0.633	--	--	0.93	--	22.1	841	5.93	6.2
238.28	0.719	5.04	--	0.99	0.541	--	--	0.645	18.1	25.09	20	5.03	6.83
269.36	0.767	5	0.744	--	--	--	--	0.712	--	--	--	--	--
248.42	0.737	5.03	--	0.822	--	--	--	0.647	17	--	--	--	--
236.16	0.716	5.07	--	--	1.05	--	--	0.462	--	21.21	938	3.05	9.55
283.95	0.787	5.02	--	--	--	--	--	0.629	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	199.45	temperature	25.0	10	> th	dose independent	rect.	5	6
8	201.63	temperature	25.0	10	> th	dose independent	rect.	1	10
11	201.85	temperature	25.0	10	> th	dose independent	rect.	23	12
13	202.18	atmosphere	1005.0	30	> th	dose dependent	rect.	6	3
17	202.26	temperature	20.0	270	> th	dose dependent	rect.	3	6
35	203.53	radiation	20.0	10	< th	dose independent	rect.	6	3
36	203.62	temperature	20.0	270	> th	dose independent	rect.	3	6
42	203.95	temperature	20.0	270	> th	dose dependent	rect.	6	1
72	205.93	temperature	10.0	720	> th	dose dependent	rect.	21	10
74	205.95	temperature	10.0	30	> th	dose dependent	rect.	6	14
79	206.02	radiation	30.0	10	< th	dose dependent	rect.	6	3
87	206.34	temperature	20.0	270	> th	dose independent	rect.	4	3
99	206.93	precipitation	0.1	30	< th	dose independent	rect.	7	23
100	206.93	precipitation	0.1	30	< th	dose dependent	rect.	7	23
112	207.37	temperature	25.0	30	< th	dose independent	sin	6	NA
114	207.40	humidity	80.0	30	> th	dose dependent	rect.	6	1
118	207.49	atmosphere	1005.0	30	> th	dose dependent	rect.	6	1
120	207.59	radiation	1.0	30	> th	dose dependent	rect.	6	1
123	207.72	wind	3.0	30	< th	dose dependent	rect.	6	1
127	207.87	temperature	25.0	30	< th	dose independent	rect.	24	15
135	208.06	temperature	10.0	720	> th	dose dependent	rect.	21	12
136	208.07	temperature	25.0	270	> th	dose independent	rect.	6	1
138	208.10	atmosphere	1005.0	30	> th	dose independent	rect.	6	3
139	208.13	temperature	30.0	30	< th	dose dependent	rect.	6	1
155	208.36	radiation	1.0	10	> th	dose independent	rect.	6	1
156	208.39	temperature	10.0	720	> th	dose dependent	rect.	19	14
162	208.49	temperature	25.0	30	> th	dose independent	sin	6	NA
192	208.96	wind	3.0	30	< th	dose independent	rect.	6	1
200	209.01	wind	9.0	4320	< th	dose independent	rect.	7	1
209	209.16	temperature	30.0	720	< th	dose independent	rect.	15	6
221	209.30	wind	3.0	30	< th	dose dependent	rect.	6	5
232	209.41	wind	1.0	30	> th	dose independent	rect.	6	1
235	209.42	humidity	70.0	720	> th	dose independent	rect.	18	1
238	209.44	humidity	70.0	30	> th	dose independent	rect.	6	3
250	209.60	temperature	10.0	1440	> th	dose independent	rect.	7	1
254	209.60	temperature	30.0	1440	< th	dose independent	rect.	7	1
258	209.60	humidity	80.0	30	> th	dose independent	rect.	6	1
259	209.60	humidity	50.0	1440	> th	dose independent	rect.	7	1
264	209.60	atmosphere	995.0	1440	> th	dose independent	rect.	7	1
265	209.60	atmosphere	1015.0	1440	< th	dose independent	rect.	7	1
266	209.60	temperature	10.0	1440	> th	dose independent	rect.	8	23
271	209.61	temperature	20.0	10	> th	dose dependent	rect.	24	11
273	209.63	temperature	30.0	720	< th	dose dependent	rect.	24	6
277	209.64	temperature	10.0	30	> th	dose independent	rect.	6	1
279	209.64	temperature	30.0	30	< th	dose independent	rect.	6	1
280	209.64	humidity	50.0	30	> th	dose independent	rect.	6	1
283	209.64	atmosphere	995.0	30	> th	dose independent	rect.	6	1
284	209.64	atmosphere	1015.0	30	< th	dose independent	rect.	6	1
285	209.64	radiation	20.0	30	< th	dose independent	rect.	6	1
288	209.64	precipitation	0.1	30	< th	dose independent	rect.	6	1
289	209.64	temperature	10.0	30	> th	dose independent	rect.	7	23
290	209.64	precipitation	0.1	30	< th	dose dependent	rect.	6	1
301	209.73	temperature	30.0	30	< th	dose independent	rect.	7	23
303	209.76	atmosphere	995.0	30	> th	dose independent	rect.	7	23
305	209.76	temperature	30.0	720	< th	dose dependent	rect.	1	2
317	209.89	humidity	60.0	30	> th	dose dependent	rect.	6	3
323	209.94	humidity	90.0	30	< th	dose independent	rect.	6	1
353	210.05	radiation	40.0	10	< th	dose dependent	rect.	6	1
367	210.12	wind	3.0	10	< th	dose independent	rect.	6	5
385	210.22	temperature	10.0	30	> th	dose dependent	rect.	6	1
396	210.28	temperature	25.0	30	> th	dose independent	rect.	23	21
442	210.62	temperature	30.0	720	< th	dose independent	rect.	15	4
498	211.08	temperature	25.0	10	> th	dose independent	rect.	6	14
504	211.11	atmosphere	995.0	30	> th	dose dependent	rect.	11	19
508	211.13	atmosphere	1005.0	10	> th	dose dependent	rect.	12	11
512	211.15	temperature	10.0	30	> th	dose dependent	rect.	6	16
516	211.19	radiation	1.0	270	> th	dose independent	rect.	6	1
525	211.23	temperature	10.0	30	> th	dose dependent	rect.	6	19
535	211.30	radiation	40.0	30	> th	dose independent	sin	12	NA
555	211.42	radiation	10.0	30	> th	dose independent	rect.	17	14
561	211.45	temperature	30.0	720	< th	dose independent	rect.	15	13
566	211.47	radiation	10.0	30	> th	dose dependent	rect.	17	14
567	211.48	temperature	30.0	14400	> th	dose independent	rect.	12	1
574	211.49	temperature	30.0	30	< th	dose dependent	rect.	1	14
575	211.50	temperature	30.0	14400	< th	dose independent	rect.	12	1
634	211.53	radiation	40.0	30	> th	dose independent	rect.	9	2
679	211.67	radiation	30.0	30	> th	dose dependent	rect.	9	2
699	211.83	temperature	15.0	720	> th	dose dependent	sin	10	NA
725	211.85	temperature	25.0	270	< th	dose dependent	rect.	23	12
730	211.87	wind	3.0	10	< th	dose dependent	rect.	6	16
751	211.96	humidity	50.0	30	> th	dose independent	rect.	7	23
759	212.01	temperature	20.0	270	< th	dose independent	rect.	24	11
774	212.04	atmosphere	995.0	30	> th	dose dependent	rect.	9	21
776	212.07	atmosphere	1015.0	30	< th	dose dependent	rect.	6	1
798	212.24	temperature	25.0	720	< th	dose dependent	rect.	3	1
822	212.33	atmosphere	1005.0	90	> th	dose dependent	rect.	11	11
832	212.37	temperature	20.0	720	> th	dose independent	rect.	21	12
860	212.47	temperature	20.0	270	> th	dose independent	rect.	3	13
861	212.47	temperature	25.0	30	> th	dose independent	rect.	1	19
863	212.47	radiation	30.0	30	> th	dose dependent	rect.	15	20
875	212.56	humidity	90.0	10	< th	dose dependent	rect.	6	1
879	212.58	wind	1.0	30	> th	dose independent	rect.	6	3
881	212.59	temperature	25.0	720	< th	dose dependent	sin	10	NA
883	212.60	radiation	10.0	270	> th	dose independent	rect.	17	14
911	212.69	temperature	20.0	270	> th	dose independent	sin	6	NA
978	212.87	wind	1.0	43200	> th	dose independent	rect.	4	1
982	212.88	wind	9.0	30	< th	dose independent	rect.	7	23