Os01g0620400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0620400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 178.23 | 0.627 | 3.89 | -0.502 | 0.582 | -1.78 | 1.12 | 0.228 | 1.31 | 0.302 | 10.86 | 8267 | -- | -- |
| 176.73 | 0.619 | 3.89 | -0.442 | 0.555 | -1.81 | 1.15 | -- | 1.34 | 0.221 | 10.5 | 10102 | -- | -- |
| 182.08 | 0.628 | 3.89 | -0.447 | 0.586 | -1.83 | -- | -0.0353 | 1.34 | 0.587 | 9.226 | 10066 | -- | -- |
| 181.99 | 0.628 | 3.89 | -0.484 | 0.556 | -1.82 | -- | -- | 1.34 | 0.652 | 9.405 | 10111 | -- | -- |
| 200.33 | 0.659 | 3.88 | -0.411 | -- | -1.76 | -- | -0.142 | 1.37 | -- | 13.7 | 11730 | -- | -- |
| 231.16 | 0.713 | 4.01 | -1.49 | 0.495 | -- | 1.07 | -- | 0.776 | 0.121 | -- | -- | -- | -- |
| 236.02 | 0.719 | 4.02 | -1.54 | 0.493 | -- | -- | -- | 0.77 | 0.414 | -- | -- | -- | -- |
| 200.37 | 0.659 | 3.87 | -0.382 | -- | -1.75 | -- | -- | 1.39 | -- | 13.97 | 11737 | -- | -- |
| 183.98 | 0.632 | 3.85 | -- | 0.556 | -1.96 | -- | -- | 1.53 | 0.457 | 6.233 | 18311 | -- | -- |
| 251.28 | 0.741 | 4.01 | -1.52 | -- | -- | -- | -- | 0.778 | -- | -- | -- | -- | -- |
| 298.37 | 0.808 | 3.98 | -- | 0.471 | -- | -- | -- | 0.942 | 0.247 | -- | -- | -- | -- |
| 201.89 | 0.662 | 3.84 | -- | -- | -1.91 | -- | -- | 1.51 | -- | 11.9 | 18991 | -- | -- |
| 312.33 | 0.825 | 3.97 | -- | -- | -- | -- | -- | 0.947 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 170.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 3 | 170.97 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 16 | 174.05 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 54 | 176.74 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 67 | 177.48 | temperature | 15 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 70 | 177.53 | temperature | 20 | 14400 | > th | dose dependent | rect. | 18 | 2 |
| 77 | 177.59 | temperature | 15 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 83 | 177.62 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 91 | 177.69 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 108 | 177.80 | temperature | 30 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 218 | 178.24 | temperature | 20 | 14400 | > th | dose dependent | rect. | 7 | 16 |
| 245 | 178.30 | temperature | 15 | 14400 | > th | dose dependent | rect. | 17 | 18 |
| 401 | 178.50 | temperature | 20 | 14400 | > th | dose dependent | sin | 19 | NA |
| 419 | 178.51 | temperature | 30 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 599 | 178.62 | temperature | 15 | 14400 | > th | dose dependent | no | NA | NA |
| 683 | 178.66 | temperature | 15 | 14400 | > th | dose dependent | sin | 4 | NA |
| 711 | 178.67 | temperature | 25 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 712 | 178.67 | temperature | 25 | 14400 | < th | dose independent | rect. | 14 | 10 |