Os01g0619900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0619900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.73 | 0.667 | 12.1 | -2.59 | 0.239 | -1.95 | -0.821 | 0.332 | 0.685 | 7.78 | 23.8 | 1076 | -- | -- |
| 201.81 | 0.662 | 12.1 | -2.56 | 0.249 | -2.02 | -0.78 | -- | 0.686 | 7.74 | 23.61 | 1074 | -- | -- |
| 203.57 | 0.665 | 12.1 | -2.61 | 0.236 | -1.98 | -- | 0.248 | 0.679 | 7.45 | 23.73 | 1110 | -- | -- |
| 203.49 | 0.664 | 12.1 | -2.57 | 0.213 | -2.06 | -- | -- | 0.701 | 7.31 | 23.46 | 1141 | -- | -- |
| 205.76 | 0.668 | 12.1 | -2.58 | -- | -2.07 | -- | 0.0681 | 0.702 | -- | 23.38 | 1208 | -- | -- |
| 254.74 | 0.748 | 12 | -1.98 | 0.249 | -- | -0.786 | -- | 1.06 | 5.77 | -- | -- | -- | -- |
| 255.98 | 0.749 | 12 | -1.99 | 0.253 | -- | -- | -- | 1.07 | 4.76 | -- | -- | -- | -- |
| 205.74 | 0.668 | 12.1 | -2.58 | -- | -2.1 | -- | -- | 0.707 | -- | 23.39 | 1212 | -- | -- |
| 350.98 | 0.873 | 12 | -- | 0.291 | -0.803 | -- | -- | 1.18 | 6.37 | 23.25 | 652 | -- | -- |
| 259.36 | 0.753 | 12 | -1.98 | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
| 360.03 | 0.888 | 12 | -- | 0.217 | -- | -- | -- | 1.29 | 5.03 | -- | -- | -- | -- |
| 353.72 | 0.876 | 12 | -- | -- | -0.73 | -- | -- | 1.18 | -- | 23.86 | 983 | -- | -- |
| 362.51 | 0.889 | 12 | -- | -- | -- | -- | -- | 1.29 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 187.96 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 5 | 189.58 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 6 | 189.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 7 | 189.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 10 | 189.74 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 19 | 190.75 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 32 | 191.25 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 38 | 191.46 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 42 | 191.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 43 | 191.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 47 | 191.70 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 48 | 191.70 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 49 | 191.75 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 57 | 192.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 58 | 192.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 63 | 192.22 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 9 |
| 79 | 192.55 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 82 | 192.64 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 96 | 193.03 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 101 | 193.10 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 15 | 9 |
| 108 | 193.16 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 132 | 193.44 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 133 | 193.45 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 150 | 193.62 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 171 | 193.77 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 15 | 14 |
| 177 | 193.81 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 201 | 193.91 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 202 | 193.91 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 205 | 193.93 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 15 | NA |
| 215 | 193.96 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 235 | 194.01 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 15 | NA |
| 259 | 194.06 | atmosphere | 1015.0 | 43200 | > th | dose dependent | sin | 13 | NA |
| 295 | 194.13 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 303 | 194.16 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 332 | 194.21 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 357 | 194.27 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 376 | 194.32 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 492 | 194.64 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 506 | 194.69 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 559 | 194.81 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 565 | 194.82 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 567 | 194.82 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 7 | 17 |
| 647 | 194.95 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 664 | 194.98 | atmosphere | 1015.0 | 43200 | > th | dose dependent | no | NA | NA |
| 692 | 195.03 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 3 | 22 |
| 693 | 195.03 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 3 | 22 |
| 695 | 195.03 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 723 | 195.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 759 | 195.16 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 13 | 21 |
| 813 | 195.25 | atmosphere | 1015.0 | 43200 | < th | dose independent | no | NA | NA |
| 818 | 195.25 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 871 | 195.33 | atmosphere | 1015.0 | 43200 | > th | dose dependent | sin | 21 | NA |
| 890 | 195.36 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 22 | 23 |
| 940 | 195.43 | atmosphere | 1015.0 | 43200 | > th | dose independent | no | NA | NA |