Os01g0618900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Virulence factor, pectin lyase fold family protein.
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Os01g0618900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Virulence factor, pectin lyase fold family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.31 | 0.568 | 8.71 | -0.722 | 1.55 | 2.15 | 0.325 | -1.91 | -0.507 | 21.8 | 19.49 | 119 | -- | -- |
| 149.12 | 0.569 | 8.67 | -0.397 | 1.52 | 2.07 | 0.562 | -- | -0.411 | 21.8 | 18.78 | 140 | -- | -- |
| 146.67 | 0.564 | 8.71 | -0.74 | 1.54 | 2.15 | -- | -1.97 | -0.506 | 21.8 | 19.38 | 125 | -- | -- |
| 150.13 | 0.571 | 8.67 | -0.408 | 1.5 | 2.06 | -- | -- | -0.408 | 21.8 | 18.7 | 152 | -- | -- |
| 194.38 | 0.649 | 8.65 | -0.627 | -- | 2.35 | -- | -0.918 | -0.5 | -- | 22.8 | 657 | -- | -- |
| 212.61 | 0.684 | 8.6 | 0.0772 | 1.66 | -- | 0.452 | -- | -0.065 | 20 | -- | -- | -- | -- |
| 213.21 | 0.684 | 8.6 | 0.065 | 1.66 | -- | -- | -- | -0.0644 | 20 | -- | -- | -- | -- |
| 196.03 | 0.652 | 8.64 | -0.517 | -- | 2.45 | -- | -- | -0.445 | -- | 22.83 | 647 | -- | -- |
| 154.22 | 0.578 | 8.66 | -- | 1.53 | 1.92 | -- | -- | -0.351 | 21.6 | 18.81 | 144 | -- | -- |
| 363.77 | 0.891 | 8.56 | 0.0488 | -- | -- | -- | -- | -0.0856 | -- | -- | -- | -- | -- |
| 213.33 | 0.683 | 8.6 | -- | 1.66 | -- | -- | -- | -0.0717 | 20 | -- | -- | -- | -- |
| 202.44 | 0.663 | 8.61 | -- | -- | 2.34 | -- | -- | -0.332 | -- | 23.48 | 648 | -- | -- |
| 363.83 | 0.89 | 8.56 | -- | -- | -- | -- | -- | -0.091 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.54 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 2 | 145.61 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 5 | 146.60 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 6 | 146.80 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 9 | 146.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 10 | 147.00 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 20 | 147.96 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 36 | 148.89 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 49 | 149.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 78 | 150.90 | temperature | 25 | 270 | < th | dose independent | rect. | 11 | 23 |
| 79 | 150.92 | temperature | 25 | 270 | > th | dose independent | rect. | 11 | 23 |
| 97 | 151.25 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 104 | 151.35 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 110 | 151.48 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 23 |
| 124 | 151.69 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 129 | 151.74 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 151 | 152.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 157 | 152.17 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 174 | 152.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 179 | 152.58 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 182 | 152.60 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 23 |
| 184 | 152.62 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 188 | 152.63 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 6 |
| 235 | 153.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 246 | 153.44 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 23 |
| 248 | 153.45 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 14 |
| 253 | 153.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 255 | 153.51 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 258 | 153.53 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 269 | 153.64 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 277 | 153.71 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 284 | 153.76 | temperature | 20 | 1440 | > th | dose dependent | sin | 4 | NA |
| 288 | 153.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 333 | 154.10 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |
| 371 | 154.32 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 379 | 154.37 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 23 |
| 387 | 154.42 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 23 |
| 428 | 154.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 460 | 154.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 491 | 154.79 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 19 |
| 516 | 154.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 522 | 154.91 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 523 | 154.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 577 | 155.09 | radiation | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 592 | 155.10 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 23 |
| 610 | 155.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 637 | 155.26 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 654 | 155.32 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 668 | 155.37 | radiation | 10 | 4320 | < th | dose dependent | rect. | 18 | 11 |
| 672 | 155.38 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 680 | 155.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 4 |
| 697 | 155.51 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 699 | 155.52 | temperature | 25 | 270 | < th | dose independent | rect. | 5 | 23 |
| 733 | 155.64 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 751 | 155.72 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 757 | 155.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 806 | 155.91 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 814 | 155.94 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 821 | 155.95 | temperature | 20 | 4320 | > th | dose dependent | rect. | 16 | 9 |
| 845 | 156.06 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 851 | 156.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 853 | 156.09 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 863 | 156.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 895 | 156.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 913 | 156.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 926 | 156.33 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 950 | 156.38 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |
| 969 | 156.43 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 991 | 156.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |