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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0618300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.92 (0.0294) R2 : 0.0127
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.15 (0.0619) R2dN8 : 0.0164 R2N8 : 0.0127
σ : 0.554
deviance : 140.78
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
126.57 0.529 2.96 0.0106 0.165 -4 0.151 -9.6 0.159 7.29 9 49 -- --
126.28 0.523 2.91 -0.0816 0.155 -3.89 0.192 -- 0.178 7.18 10.45 54 -- --
125.36 0.521 2.95 0.045 0.153 -4.09 -- -9.53 0.169 7.22 9.131 51 -- --
124.72 0.52 2.92 -0.11 0.159 -3.22 -- -- 0.144 7.88 10.49 49 -- --
126.38 0.524 2.97 0.0299 -- -4.24 -- -9.85 0.164 -- 9.2 48 -- --
138.63 0.552 2.92 -0.188 0.136 -- 0.313 -- 0.129 8.13 -- -- -- --
138.91 0.552 2.92 -0.179 0.136 -- -- -- 0.129 8.55 -- -- -- --
126.28 0.523 2.92 -0.107 -- -3.11 -- -- 0.159 -- 10.49 49 -- --
124.97 0.521 2.91 -- 0.173 -3.23 -- -- 0.169 7.6 10.49 48 -- --
139.94 0.553 2.93 -0.178 -- -- -- -- 0.13 -- -- -- -- --
139.75 0.553 2.92 -- 0.135 -- -- -- 0.149 8.65 -- -- -- --
126.57 0.524 2.92 -- -- -3.15 -- -- 0.171 -- 10.49 49 -- --
140.78 0.554 2.92 -- -- -- -- -- 0.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 124.35 wind 9.0 720 > th dose independent rect. 11 1
2 124.39 wind 9.0 720 > th dose dependent rect. 11 1
3 124.63 radiation 10.0 720 < th dose dependent rect. 10 2
4 124.76 wind 9.0 720 > th dose dependent rect. 10 3
5 124.82 wind 9.0 720 > th dose independent rect. 10 3
31 125.41 wind 9.0 90 > th dose dependent rect. 19 21
55 125.86 wind 9.0 720 > th dose dependent sin 6 NA
97 126.08 wind 9.0 720 > th dose independent sin 6 NA
137 126.36 wind 9.0 270 > th dose independent rect. 18 22
153 126.51 wind 9.0 90 > th dose dependent rect. 11 5
169 126.59 wind 9.0 30 < th dose independent sin 16 NA
170 126.59 wind 9.0 720 < th dose independent sin 6 NA
186 126.75 wind 9.0 30 > th dose independent sin 16 NA
209 126.98 wind 9.0 90 > th dose independent rect. 11 5
229 127.30 wind 9.0 90 > th dose dependent rect. 13 3
236 127.41 wind 9.0 720 > th dose dependent rect. 13 1
238 127.43 wind 9.0 90 > th dose independent rect. 13 3
271 127.93 wind 9.0 90 > th dose independent rect. 15 1
273 127.93 wind 9.0 90 > th dose dependent rect. 15 1
275 127.94 wind 9.0 10 > th dose independent rect. 15 1
283 127.94 wind 9.0 10 > th dose dependent rect. 15 1
295 128.01 wind 7.0 270 > th dose dependent rect. 11 11
300 128.06 wind 9.0 90 > th dose independent rect. 19 15
303 128.07 wind 7.0 10 > th dose independent rect. 20 8
313 128.10 wind 9.0 90 > th dose independent rect. 18 4
317 128.12 wind 9.0 90 > th dose independent rect. 19 7
326 128.13 wind 9.0 30 > th dose dependent rect. 19 7
354 128.19 wind 9.0 90 > th dose dependent rect. 18 3
370 128.26 radiation 10.0 720 < th dose independent rect. 10 1
398 128.36 wind 7.0 90 > th dose independent rect. 20 1
410 128.37 wind 9.0 30 > th dose independent rect. 15 7
525 128.56 wind 7.0 90 > th dose dependent rect. 20 1
526 128.56 wind 5.0 10 > th dose dependent rect. 20 3
754 128.81 precipitation 0.1 1440 > th dose independent rect. 10 3
773 128.81 wind 7.0 270 > th dose dependent no NA NA
775 128.81 precipitation 0.1 1440 > th dose dependent rect. 10 3
835 128.87 wind 9.0 30 < th dose independent no NA NA
889 128.93 wind 9.0 270 > th dose independent rect. 10 12
923 128.99 radiation 10.0 90 < th dose dependent rect. 10 2
988 129.07 precipitation 0.1 1440 > th dose independent rect. 12 1
990 129.07 precipitation 0.1 1440 > th dose dependent rect. 12 1
1000 129.09 wind 9.0 270 > th dose independent no NA NA